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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggacaaaaaaaaactcattcttttttctcctttgatggttttgccatgatgagtattaaaacaatactcactatgctattatttttgcaaagttctcaccgatctattgcgatttgtttgcagCCATAATGGGCTACAAAATATGGCCATGGGGCCATGACACAAATAAGATGGTCCATTTGCTTCTTCATGCTATTGCACTTTTGCTGGGTTCAGTTGGAAT

Basic information

species Oryza sativa
transcript LOC_Os10g36030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36030.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G081148_T01 (Zea mays), 3'ss of exon 2
gtcaggacaaaaaaaaactcattcttttttctcctttgatggttttgccatgatgagtattaaaacaatactcactatgctattatttttgcaaagttctcaccgatctattgcgatttgtttgcagCCATAATGGGCTACAAAATATGGCCATGGGGCCATGACACAAATAAGATGGTCCATTTGCTTCTTCATGCTATTGCACTTTTGCTGGGTTCAGTTGGAAT
           | |  ||   |||||||||||  | |             |||||| | ||    || || |  |  |          ||| | | ||   ||| | || |||| |||||| ||||||||||||| |||||||||||||||||||| | ||||| ||||| |||||||| ||  |||||||||||||| ||||||| || |||||||| ||||| ||
---------gtatagtacaagttcttttttcttttct-------------tgatgattttt----cattattggccgta---------ttggacatttaggaccaagctgttgccatttgtctgcagCCATAATGAGCTACAAAATATGGCCATGGAGTCATGATACAAACAAGATGGTTCACATGCTTCTTCATGCTGTTGCACTCTTCCTGGGTTCTGTTGGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactatgctattatttttgcaaagttctcaccgatctattgcgatttgtttgcagCCATAATGGGCTACAAAATATGGCCATGGGGCCATGACACAAATAAGATGGTCCATTTGCTTCTTCATGCTATTGCACTTTTGCTGGGTTCAGTTGGAAT
                                            tttgttt  CT-rich tract
        tattatttttgcaaa  TA-rich tract