1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgagtctaccccgtccacttcgccgaattttcgcccgcgagatcacctgatatctgctgctttgcctaatgtggcgtgtgatgcgcttgccgcttgctgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCATCGTCGCGCTGGCCAAGTGGAGGATCCTCAACAGGCTGCACGACCGGAA
species | Oryza sativa |
transcript | LOC_Os10g35960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACGACCGCTTCA CAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCAEST: gi|29664101|gb|CB660376.1|CB660376
genomic: TACGACCGCTTCAgtgagtctac ... tgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCA
EST: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCA TAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCAEST: gi|29671880|gb|CB668155.1|CB668155
genomic: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCAgtgagtctac ... tgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCA
EST: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCA TAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCAEST: gi|29656255|gb|CB652530.1|CB652530
genomic: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCAgtgagtctac ... tgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCA
EST: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCA TAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCAEST: gi|58671475|gb|CK060161.1|CK060161
genomic: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCAgtgagtctac ... tgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCA
EST: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCA TAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCAEST: gi|58610445|gb|CK038157.1|CK038157
genomic: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCAgtgagtctac ... tgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCA
EST: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCA TAAACTCGTTCAGGTCGCTGGAGCACAACAGCGCGGGGAGAGCCCGACACC
genomic: CCTCCTCCCGCCGCGGGTCATGTCGTTCGAGCAGCAGTACGACCGCTTCAgtgagtctac ... tgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACC-CGGGGAGAGCCCGACACC
tctgctgctttgcctaatgtggcgtgtgatgcgcttgccgcttgctgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCATCGTCGCGCTGGCCAAGTGGAGGATCCTCAACAGGCTGCACGACCGGAA
gcctaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctaccccgtccacttcgccgaattttcgcccgcgagatcacctgatatctgctgctttgcctaatgtggcgtgtgatgcgcttgccgcttgctgtgttgcagTAAACTCGTTCAGGTCGCTGGAGCACAACACCCGGGGAGAGCCCGACACCATCGTCGCGCTGGCCAAGTGGAGGATCCTCAACAGGCTGCACGACCGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT