1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caacaacaacaataacaacgagcaaaatctatatcgaatccggtttccctcttgtaactgtatcaaagatctgtcctctgaaacgtcccctgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGGGGTGGCAGCTGGGGTGGACATGGCAGCAGAAGGAGGTGATCTGGTCCA
species | Oryza sativa |
transcript | LOC_Os10g35460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|86902691|gb|CI306494.1|CI306494
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|58694373|gb|CK083060.1|CK083060
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|88727668|gb|CI749470.1|CI749470
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|88327674|gb|CI657408.1|CI657408
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|88406379|gb|CI596506.1|CI596506
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|88433522|gb|CI594336.1|CI594336
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|88423745|gb|CI617097.1|CI617097
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGEST: gi|33681718|gb|CF309957.1|CF309957
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCATCAATTCCGGCACATCCATCCACCGEST: gi|88313719|gb|CI597350.1|CI597350
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
EST: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCT GCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
genomic: ACATCACGATAAAATGGGATGTGATGCAATGGACTCCTGATGGCTATGCTgtaagtagcg ... tgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCG
tccctcttgtaactgtatcaaagatctgtcctctgaaacgtcccctgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGGGGTGGCAGCTGGGGTGGACATGGCAGCAGAAGGAGGTGATCTGGTCCA
ttgtaac putative branch site (score: 1)
tcccctgttc putative PPT
tatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacaacaacaataacaacgagcaaaatctatatcgaatccggtttccctcttgtaactgtatcaaagatctgtcctctgaaacgtcccctgttcatcagGCCGTTGTCACACTGTCCAACTACCAGCAATTCCGGCACATCCAGCCACCGGGGTGGCAGCTGGGGTGGACATGGCAGCAGAAGGAGGTGATCTGGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - caacaat
- - - - - - - - - -gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatc