1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gagcaatgaatccaaattattttccatggccaaaatagtgggaacatatttgataattacaagataattgaaactcttttctaatctttttggcatgcagAGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCATGCTGGCGCAGGATTG
species | Oryza sativa |
transcript | LOC_Os10g34400.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCTACATCAAAAAACGATACTGTGGGCAGAGCAATTTCTGACTTAAAT AGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCATEST: gi|29628475|gb|CB633486.1|CB633486
genomic: CGGCTACATCAAAAAACGATACTGTGGGCAGAGCAATTTCTGACTTAAATgtaaggagta ... tggcatgcagAGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCAT
EST: CGGCTACATCAAAAAACGATACTGTGGGCAGAGCAATTTCTGACTTAAAT AGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCATEST: gi|66926056|gb|CX112904.1|CX112904
genomic: CGGCTACATCAAAAAACGATACTGTGGGCAGAGCAATTTCTGACTTAAATgtaaggagta ... tggcatgcagAGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCAT
EST: CGGCTACATCAAAAAACGATACTGTGGGCAGAGCAATTTCTGACTTAAAT AGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCAT
genomic: CGGCTACATCAAAAAACGATACTGTGGGCAGAGCAATTTCTGACTTAAATgtaaggagta ... tggcatgcagAGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCAT
atatttgataattacaagataattgaaactcttttctaatctttttggcatgcagAGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCATGCTGGCGCAGGATTG
ttctaat putative branch site (score: 49)
ctcttttctaatcttt CT-rich tract
ataattacaagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcaatgaatccaaattattttccatggccaaaatagtgggaacatatttgataattacaagataattgaaactcttttctaatctttttggcatgcagAGTGCAATAGAAGAGGAGCGCTACATGGATGCAACTTATATTAGAGATCATGCTGGCGCAGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - tgaatcc
- - - - - - - - - - - - catggcc
- - - - - - - - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagataa