1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaattttgcctgcttgttcagttgaccaggagtagtcttgtttcagtgactggggaagagaagatatggagtctgatgaatgtttgcttaatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCC
species | Oryza sativa |
transcript | LOC_Os10g31000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA GTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATEST: gi|58659537|gb|CK048217.1|CK048217
genomic: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA GTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATEST: gi|163926790|gb|EG715078.1|EG715078
genomic: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA GTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAAAATTGCCTGATGCATEST: gi|38478467|gb|CF962600.1|CF962600
genomic: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
EST: AGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA G--TTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATEST: gi|27410240|gb|CA923310.1|CA923310
genomic: AGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA GTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATEST: gi|163927163|gb|EG715184.1|EG715184
genomic: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA GTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATEST: gi|86896481|gb|CI328868.1|CI328868
genomic: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
EST: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAA GTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGGATTGCCTGATGCATEST: gi|58681245|gb|CK069932.1|CK069932
genomic: GAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
EST: AGGAG-TCTTCGTGGAATTCCGGGGGCCTACTGAAA GTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
genomic: AGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgc ... aatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCAT
agtgactggggaagagaagatatggagtctgatgaatgtttgcttaatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCC
gcttaat putative branch site (score: 63)
ttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaattttgcctgcttgttcagttgaccaggagtagtcttgtttcagtgactggggaagagaagatatggagtctgatgaatgtttgcttaatttggcagGTATTTATCAAGGTGGTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCC
- - - -tgcctgc
- - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - gtgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatga