1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgataatgcaaaacactagctctttaggtggcctttgttggtttcaacacttccagttccaatgggatttggttataatgttttgatttactccttgaagGTACCGTATACAAAGTGATCGAAAAGTCGCAATCTGCAGTGTACATCCAATGGAACAAGCAACAATTCAGTGCCTTGGTTGCGTCAAGTCAAAAATACCT
species | Oryza sativa |
transcript | LOC_Os10g27230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGTCCCGGAGGCCGCCCCCGCGGATGGCTACTTCATGCGGTACAGATG GTACCGTATACAAAGTGATCGAAAAGTCGCAATCTGCAGTGTACATCCAATEST: gi|29656326|gb|CB652601.1|CB652601
genomic: GATGTCCCGGAGGCCGCCCCTGCGGATGGCTACTTCATGCGGTACAGATGgtgagtaact ... ctccttgaagGTACCGTATACAAAGTGATCGAAAAGTCGCAATCTGCAGTGTACATCCAAT
EST: GCGGTACAGATG GTACCGTATACAAAGTGATCGAAAAGTCGCAATCTGCAGTGTACATCCAAT
genomic: GCGGTACAGATGgtgagtaact ... ctccttgaagGTACCGTATACAAAGTGATCGAAAAGTCGCAATCTGCAGTGTACATCCAAT
aacacttccagttccaatgggatttggttataatgttttgatttactccttgaagGTACCGTATACAAAGTGATCGAAAAGTCGCAATCTGCAGTGTACATCCAATGGAACAAGCAACAATTCAGTGCCTTGGTTGCGTCAAGTCAAAAATACCT
ttttgat putative branch site (score: 4)
tttactcctt CT-rich tract
ttataatgttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataatgcaaaacactagctctttaggtggcctttgttggtttcaacacttccagttccaatgggatttggttataatgttttgatttactccttgaagGTACCGTATACAAAGTGATCGAAAAGTCGCAATCTGCAGTGTACATCCAATGGAACAAGCAACAATTCAGTGCCTTGGTTGCGTCAAGTCAAAAATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -taatgca
- - - - - - -cactagc
- - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg