1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcattagcctttctcggtaagttagctaaacggcatgttatttaaaatcaaattagttgttcaaaataacgcatattcatagccaattctctggttgcagATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGAGGAGGTCCTTTGGATGAGACAAGGAGGAGCCAGGAGGTCCTCTGAAATT
species | Oryza sativa |
transcript | LOC_Os10g21890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAG ATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGAEST: gi|88372883|gb|CI640334.1|CI640334
genomic: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAGgttgccattt ... ctggttgcagATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGA
EST: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAG ATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGAEST: gi|88347371|gb|CI632656.1|CI632656
genomic: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAGgttgccattt ... ctggttgcagATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGA
EST: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAG ATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGAEST: gi|88391894|gb|CI603413.1|CI603413
genomic: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAGgttgccattt ... ctggttgcagATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGA
EST: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAG ATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGA
genomic: TATCGTTTTATCAGGACAGCCCGCCAATTCCCATCATTTCTGCTGTTAAGgttgccattt ... ctggttgcagATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGA
aatcaaattagttgttcaaaataacgcatattcatagccaattctctggttgcagATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGAGGAGGTCCTTTGGATGAGACAAGGAGGAGCCAGGAGGTCCTCTGAAATT
aaataac putative branch site (score: 3)
ttctct putative PPT
ttcaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattagcctttctcggtaagttagctaaacggcatgttatttaaaatcaaattagttgttcaaaataacgcatattcatagccaattctctggttgcagATATTGTTGTTGGTTGAAGATTGTCATTAGGAACGGTGTTGTGTTGTGGGAGGAGGTCCTTTGGATGAGACAAGGAGGAGCCAGGAGGTCCTCTGAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG