1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacacacaacacctgttatttatcccttactcatgtttattcgcttctagcatcatgtacatccaacgtgcattcagatcaacatgttcctacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGCTGGTGCAGACGTTTGGGCAGAAGAACCATGCGTGTCTCAAGGATGGCT
species | Oryza sativa |
transcript | LOC_Os10g10080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAG GAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGEST: gi|8857145|gb|AU094463.1|AU094463
genomic: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACG
EST: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAG GAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGEST: gi|58656039|gb|CK044719.1|CK044719
genomic: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACG
EST: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAG GAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGEST: gi|29678567|gb|CB674842.1|CB674842
genomic: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACG
EST: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAG GAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGEST: gi|58598760|gb|CK009288.1|CK009288
genomic: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACG
EST: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAG GAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGEST: gi|58613328|gb|CK041040.1|CK041040
genomic: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACG
EST: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTATTTCCAG GAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGEST: gi|29659811|gb|CB656086.1|CB656086
genomic: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACG
EST: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAG GAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGEST: gi|1944244|gb|C23566.1|C23566
genomic: ATCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTTCCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACG
EST: TCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTAATTTCCAG GAGGCGAAGGTTATT
genomic: TCATTTCTTCGTTGTGCCACATGACTTTGCAGCGTGCTTCTACTT-CCAGgtgagtcatg ... tacttttcagGAGGCGAAGGCTATT
tctagcatcatgtacatccaacgtgcattcagatcaacatgttcctacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGCTGGTGCAGACGTTTGGGCAGAAGAACCATGCGTGTCTCAAGGATGGCT
tgttcctacttttc CT-rich tract
tactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacacaacacctgttatttatcccttactcatgtttattcgcttctagcatcatgtacatccaacgtgcattcagatcaacatgttcctacttttcagGAGGCGAAGGCTATTGAGCGAGGCATCCTTCCGGTGCTGCGCCGTGCTACGCTGGTGCAGACGTTTGGGCAGAAGAACCATGCGTGTCTCAAGGATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - cacaaca
- - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc