1 5' 3' | 2 5' 3' | 3 5' 3' |
...catatacatttttttctctattctctttgtccaaaacatttcaacatgtacattgattaatttattaatattgttcacgggattacatgaacacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGGAGAAAGGAATTCAGCTCTGTGCCTACTCTCCTTTAGGTGGAAAGGGTA
species | Oryza sativa |
transcript | LOC_Os10g02480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|29615189|gb|CB620202.1|CB620202
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCATCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|8859367|gb|AU096685.1|AU096685
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|33800272|gb|CF326002.1|CF326002
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|29638999|gb|CB644008.1|CB644008
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|29688767|gb|CB685042.1|CB685042
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|29688766|gb|CB685041.1|CB685041
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|88965301|gb|CI009337.1|CI009337
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: CTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|25798126|gb|CA754094.1|CA754094
genomic: CTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCCAAEST: gi|2801031|gb|AA754325.1|AA754325
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGC-AA
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGEST: gi|38471635|gb|CF955766.1|CF955766
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCATCCTTACTGTCGGCAAAATEST: gi|29686964|gb|CB683239.1|CB683239
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAAT
EST: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAA GTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
genomic: AGCTCGAGACATTGCTCTCCTTCGCAACCATCTCTCCTGCAGCAAATCAAgtaaaagttc ... acacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAG
atgtacattgattaatttattaatattgttcacgggattacatgaacacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGGAGAAAGGAATTCAGCTCTGTGCCTACTCTCCTTTAGGTGGAAAGGGTA
tattaat putative branch site (score: 2)
attgattaatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatacatttttttctctattctctttgtccaaaacatttcaacatgtacattgattaatttattaatattgttcacgggattacatgaacacttgcagGTTGAGGTGCACCCCTACTGTCGGCAAAATAAATTGAGGGAGTTCTGCAAGGAGAAAGGAATTCAGCTCTGTGCCTACTCTCCTTTAGGTGGAAAGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA