1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gataccaatgagttaaaatgtgtccctttttctctcaaacatgctggagagagctgtgtatcattgcgttaaaatgtgtatctcctgtcataattttcagGTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTCGTGAATCAAATGTGGAAGGAAGAATCGTTAATGTTTCATCAGAGGGGCA
species | Oryza sativa |
transcript | LOC_Os09g39670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTCTCAAAGGATGGTATCGAGTTGCAATTTGCCACTAACCATGTTG GTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTCEST: gi|58677683|gb|CK066370.1|CK066370
genomic: CTCTCTCTCAAAGGATGGTATCGAGTTGCAATTTGCCACTAACCATGTTGgtatgaactt ... taattttcagGTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTC
EST: CTCTCTCTCAAAGGATGGTATCGAGTTGCAATTTGCCACTAACCATGTTG GTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTCEST: gi|5003515|gb|AU068664.1|AU068664
genomic: CTCTCTCTCAAAGGATGGTATCGAGTTGCAATTTGCCACTAACCATGTTGgtatgaactt ... taattttcagGTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTC
EST: CCACTAACCATGTTG GTCATTTNCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTC
genomic: CCACTAACCATGTTGgtatgaactt ... taattttcagGTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTC
ggagagagctgtgtatcattgcgttaaaatgtgtatctcctgtcataattttcagGTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTCGTGAATCAAATGTGGAAGGAAGAATCGTTAATGTTTCATCAGAGGGGCA
ttttc CT-rich tract
tcataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataccaatgagttaaaatgtgtccctttttctctcaaacatgctggagagagctgtgtatcattgcgttaaaatgtgtatctcctgtcataattttcagGTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTCGTGAATCAAATGTGGAAGGAAGAATCGTTAATGTTTCATCAGAGGGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
-ataccaa
- - - - - - - - - tgtgtcc
- - - - - - - - - - - - - - - - - - - -catgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatc