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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactattgtacaactaatctactcatcaaaagtgtctttgtatcgtcttgtttctgtggtttctaatactattttttttgtttcaatcatgaagGGGTACAACCTCCAATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAGTGATGCTATCAAGTCAAGTACAGGGTCTATCGTTCTCCATCTGGGAAAG

Basic information

species Oryza sativa
transcript LOC_Os09g39320.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29621799|gb|CB626810.1|CB626810
EST:     ATGAAGGATGTGATAAACCAGCTAGCCAAGCTTGTGTCTTCCAGAATGGG                         GGGTACAACCTCCAATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAG
genomic: ATGAAGGATGTGATAAACCAGCTAGCCAAGCTTGTGTCTTCCAGAATGGGgtgactattg ... aatcatgaagGGGTACAACCTCCAATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcgtcttgtttctgtggtttctaatactattttttttgtttcaatcatgaagGGGTACAACCTCCAATGAAGAGAGTTTTCTTCCACGCTGGAAAGAGTGCAGTGATGCTATCAAGTCAAGTACAGGGTCTATCGTTCTCCATCTGGGAAAG
                     ttctaat  putative branch site (score: 2)
                                ttttttttgtttca  putative PPT
                    tttctaatactatttt  TA-rich tract