1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgttcttctgttgctactaaatttttaaaagtatggtagtatgatgtaaagaatgtacagatttcatgctttgatgataaacctttttaatgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATG
species | Oryza sativa |
transcript | LOC_Os09g39180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTEST: gi|88592306|gb|CI710404.1|CI710404
genomic: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
EST: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTEST: gi|29666156|gb|CB662431.1|CB662431
genomic: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
EST: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTEST: gi|29666122|gb|CB662397.1|CB662397
genomic: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
EST: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTEST: gi|88306842|gb|CI672008.1|CI672008
genomic: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
EST: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTEST: gi|86261198|gb|CI004763.1|CI004763
genomic: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
EST: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTEST: gi|29685874|gb|CB682149.1|CB682149
genomic: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
EST: GTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTEST: gi|89167291|gb|CI252822.1|CI252822
genomic: GTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
EST: TGAGCACCGTTGAGGAGGCTGAGAAGNCTGTGGAGATGTTCCATCGCTAC GATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
genomic: TGAGCACCGTTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCTACgtgagtctct ... atgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCT
tgtaaagaatgtacagatttcatgctttgatgataaacctttttaatgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATG
ttttaat putative branch site (score: 67)
ataaacctttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttcttctgttgctactaaatttttaaaagtatggtagtatgatgtaaagaatgtacagatttcatgctttgatgataaacctttttaatgtggatagGATGTTGATGGGAGGCTTCTGACTGTAAACAAGGCAGCTCCTAGAGGCGCTCGGGTGGAAAGACCTCCCCGTCAGTTTGGGCCTTCTTTCAGGATTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
ttgttct
- - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - aaagaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatga