1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttattcatgtgtaggaattaaatattccagtgagtttaaccagccatatattttcctataagaacttgttaactttatttagttcatgttctaaatgcagAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGC
species | Oryza sativa |
transcript | LOC_Os09g38790.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAG AGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCEST: gi|29655595|gb|CB651870.1|CB651870
genomic: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGgtactgctat ... ctaaatgcagAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGC
EST: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAG AGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCEST: gi|29630516|gb|CB635525.1|CB635525
genomic: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGgtactgctat ... ctaaatgcagAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGC
EST: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAG AGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCEST: gi|58664656|gb|CK053342.1|CK053342
genomic: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGgtactgctat ... ctaaatgcagAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGC
EST: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGGCCACTATGGAGAAG AGGAAGACCCTTCATCGAAGGTAGCCCAAGTGGAAGTGGCATCGCTAAGGC
genomic: TGGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGgtactgctat ... ctaaatgcagAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGC
atatattttcctataagaacttgttaactttatttagttcatgttctaaatgcagAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGC
ttctaaa putative branch site (score: 2)
ttgttaactttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattcatgtgtaggaattaaatattccagtgagtttaaccagccatatattttcctataagaacttgttaactttatttagttcatgttctaaatgcagAGGAAGACCCTTCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCAGCGGGCATGGTATATCCTCCACGACCGGC
- attcatg
- - - - - - - - - - - - - - - - - - -aaccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatg