1 5' 3' | 2 5' 3' | 3 5' 3' |
...cagtcaacttcactacttcttacttcgatataaaatctactggcatagaagtgttatagtcaatcaatcacctcatcattctgttggtattcctttatagGATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
species | Oryza sativa |
transcript | LOC_Os09g37949.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGACTTGCCAGGGCTGTAGTGAAGATGAG GATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAGEST: gi|218480142|gb|FG948349.1|FG948349
genomic: CCAAGACTTGCCAGGGCTGTAGTGAAGATGAGgtaagaaact ... tcctttatagGATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
EST: GTGAAGTGCTGTTTGCTCCCAAGACTTGCCAGCGCTGTAGTGAAGATGAG GATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAGEST: gi|58693800|gb|CK082487.1|CK082487
genomic: GTGAAGTGCTGTTTGCTCCCAAGACTTGCCAGGGCTGTAGTGAAGATGAGgtaagaaact ... tcctttatagGATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
EST: GTGAAGTGCTGTTTGCTCCCAAGACTTGCCAGGGCTGTAGTGAAGATGAG GATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAGEST: gi|58694732|gb|CK083419.1|CK083419
genomic: GTGAAGTGCTGTTTGCTCCCAAGACTTGCCAGGGCTGTAGTGAAGATGAGgtaagaaact ... tcctttatagGATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
EST: GTGAAGTGCTGTTTGCTCCCAAGACTTGCCAGGGCTGTAGTGAAGATGAG GATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
genomic: GTGAAGTGCTGTTTGCTCCCAAGACTTGCCAGGGCTGTAGTGAAGATGAGgtaagaaact ... tcctttatagGATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
tagaagtgttatagtcaatcaatcacctcatcattctgttggtattcctttatagGATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
tattccttt CT-rich tract
tttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtcaacttcactacttcttacttcgatataaaatctactggcatagaagtgttatagtcaatcaatcacctcatcattctgttggtattcctttatagGATCACTTGGCTCTGATGATGGAAACCCTTGGAAAGATGCCTAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - ctactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgg