Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgttggtggttttgtgcttgtgctcgcgggtggtttcggttcgttttggttgggttgggttttgatttggggttttttgtggtgtttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT

Basic information

species Oryza sativa
transcript LOC_Os09g37910.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G162284_T02 (Zea mays), 3'ss of exon 2
gtgagttttgttggtggttttgtgcttgtgctcgcgggtggtttcggttcgttttggttgggttg--ggttttgatttgg--ggttttttgtggtgtttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT
                    |  | |   | | |        ||   | | || | ||||  ||   ||||||||||| |  ||  |||  | || |||   |||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||| |||| |||||||||||| |||||
-------------------gtacgatacggtttgaccacctatttcatccattctcgttgtttttccggttttgattttgatgggatttgtttgtttttgccgaagGCTCTCGGTGAGGAAGACCAAGGTTGAGAAGGACCCAAACAAGCCCAAGAGGCCTCCGACCGCGTTCTTCGTCTTCAT

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G066528_T02 (Zea mays), 3'ss of exon 2
gtgagttttgttggtggttttgtgcttgtgctcgcgggtggtttcggttcgttttggttgggttgggttttgatttggggttttttgtggtgtttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT
        | |   | | |||| ||    |||  |      | ||| ||  ||||| ||| |    ||||| |  |||  || ||||   | |||  ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| |||||
-------gtatgattcgatttg-gccaccgctatcaaccattctcgttt--ttttgtttgtg----gttttaaactggatttgtttg---ttttttttgaagGCTCTCGGTGAGGAAGACCAAGGCAGAGAAGGACCCAAACAAGCCCAAGAGGCCTCCGAGCGCGTTCTTCGTCTTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88903838|gb|CI711540.1|CI711540
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|701299|gb|D47590.1|D47590
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|55414429|gb|CV726805.1|CV726805
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCTG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33663560|gb|CF294527.1|CF294527
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|86829841|gb|CI288535.1|CI288535
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|55435413|gb|CV730838.1|CV730838
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGACGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|55439165|gb|CV732884.1|CV732884
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCTT                         TCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|571727|gb|D41238.1|D41238
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|86829652|gb|CI286813.1|CI286813
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88728459|gb|CI751969.1|CI751969
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAACACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33664035|gb|CF295002.1|CF295002
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCANCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|572169|gb|D41680.1|D41680
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88666280|gb|CI716436.1|CI716436
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|701542|gb|D47833.1|D47833
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33691038|gb|CF319277.1|CF319277
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33655319|gb|CF277933.1|CF277933
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|15008575|gb|AU222963.1|AU222963
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33655325|gb|CF277939.1|CF277939
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88336088|gb|CI647282.1|CI647282
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|55438827|gb|CV732712.1|CV732712
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88595104|gb|CI715260.1|CI715260
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88666063|gb|CI716219.1|CI716219
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88720160|gb|CI745250.1|CI745250
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88352919|gb|CI678953.1|CI678953
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88341443|gb|CI635641.1|CI635641
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88409966|gb|CI571223.1|CI571223
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88904434|gb|CI711742.1|CI711742
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|163926292|gb|EG712876.1|EG712876
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33665089|gb|CF296056.1|CF296056
EST:     GGCTCGAGATGGAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88576662|gb|CI670807.1|CI670807
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33683487|gb|CF311726.1|CF311726
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|24208407|gb|AU225434.1|AU225434
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGA
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGG-TGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGA
EST: gi|4878390|gb|AU062689.1|AU062689
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88571600|gb|CI662973.1|CI662973
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|569750|gb|D40599.1|D40599
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33659238|gb|CF281851.1|CF281851
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|11863289|gb|AU065278.2|AU065278
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGNCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGANCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33665399|gb|CF296366.1|CF296366
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33823174|gb|CF337387.1|CF337387
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|55437048|gb|CV731721.1|CV731721
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGTGTTA-ACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|88955287|gb|CI721859.1|CI721859
EST:     GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG
EST: gi|33662889|gb|CF293856.1|CF293856
EST:     GGCTCGAGATGAATGCGAGGTCGAGGTCCAGCAATGGCGACTCCAG                         GCTCTCGGTGAGGAATATCTATGCGGAGAAGGACCCGAACAAGCCGAAGAG
genomic: GGCTCGAGATGAAGGCGAGGTCGAGGTCCAGCAATGGCGACTCCAGgtgagttttg ... tttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgttttggttgggttgggttttgatttggggttttttgtggtgtttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT
                    ttttgat  putative branch site (score: 4)
                    ttttgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttgttggtggttttgtgcttgtgctcgcgggtggtttcggttcgttttggttgggttgggttttgatttggggttttttgtggtgtttcgtgaagGCTCTCGGTGAGGAAGACCAAGGCGGAGAAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG