1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgcagattggaatatgtgcatggtatttcttgagtgaaaaaacaacatgcttatgatgctgatcatatttctcatgaagctatttttgggctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATTGATCTTTTCTGTGAGCTGATTGTTACACGCCTTCCCATCATTGCAAAGC
species | Oryza sativa |
transcript | LOC_Os09g37510.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGG GTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATTEST: gi|88330945|gb|CI638353.1|CI638353
genomic: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGGgtaaaggatc ... ctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATT
EST: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGG GTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATTEST: gi|88742871|gb|CI766379.1|CI766379
genomic: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGGgtaaaggatc ... ctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATT
EST: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGG GTTGAGCATGTCATTACAGAACAGAACATTATGGCAGCGAATGAGATCATTEST: gi|88305120|gb|CI652057.1|CI652057
genomic: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGGgtaaaggatc ... ctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATT
EST: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGG GTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATTEST: gi|86903390|gb|CI310550.1|CI310550
genomic: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGGgtaaaggatc ... ctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATT
EST: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGG GTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATTEST: gi|58679451|gb|CK068138.1|CK068138
genomic: ACATCGCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGGgtaaaggatc ... ctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATT
EST: GCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGG GTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATT
genomic: GCCGCGCTCCTCCGCGACCGCCAGGAGGACACCGCCCGGATCAGGgtaaaggatc ... ctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATT
catgcttatgatgctgatcatatttctcatgaagctatttttgggctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATTGATCTTTTCTGTGAGCTGATTGTTACACGCCTTCCCATCATTGCAAAGC
tgctgat putative branch site (score: 7)
ctttttac putative PPT
atcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagattggaatatgtgcatggtatttcttgagtgaaaaaacaacatgcttatgatgctgatcatatttctcatgaagctatttttgggctttttacagGTTGAGCATGTCATTAGAGAACAGAACATTATGGCAGCGAATGAGATCATTGATCTTTTCTGTGAGCTGATTGTTACACGCCTTCCCATCATTGCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
tgcagat
- - - - - - - - tgcatgg
- - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - - - - - -aacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagct