1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgtgcttaatgagtaccttcctaaaagagttgttcttaactggtaatgatatctctctgagttccacacatagtaacctcttcttttttttttctgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGGAGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAAC
species | Oryza sativa |
transcript | LOC_Os09g37270.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aatgatatctctctgagttccacacatagtaacctcttcttttttttttctgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGGAGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAAC
tagtaac putative branch site (score: 5)
taacctcttctttttt CT-rich tract
tcttctttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgcttaatgagtaccttcctaaaagagttgttcttaactggtaatgatatctctctgagttccacacatagtaacctcttcttttttttttctgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATATATAACAGCTGAACAATTCTCACCGGAGTGCCTCCTCGATTGCTTGGATCTGTCATCAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- -tgcttaa
- - - - - - - - ccttcct
- - - - - - - - - - - - - - - ttgttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacata