1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttatcttttctgggagctagtcaattggtttactagcctaaattttgaggatccatctcactttaaagcttgcttgcagGAAACAGATTGGCAAAAACAACTGGCAACAAACAACCTGAAATCTATTTTGTCCAAGGAG
species | Oryza sativa |
transcript | LOC_Os09g36190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCCCAAGGATAGGGAAGGTAATCAG GAAACAGATTGGCAAAAACAACTGGCAACAAACAACCTGAAATCTATTTTGEST: gi|29628540|gb|CB633551.1|CB633551
genomic: GATCCCAAGGATAGGGAAGGTAATCAGgtatttatct ... ttgcttgcagGAAACAGATTGGCAAAAACAACTGGCAACAAACAACCTGAAATCTATTTTG
EST: ATCCCAAGGATAGGGAAGGTAATCAG GAAACAGATTGGCAAAAACAACTGGCAACAAACAACCTGAAATCTATTTTG
genomic: ATCCCAAGGATAGGGAAGGTAATCAGgtatttatct ... ttgcttgcagGAAACAGATTGGCAAAAACAACTGGCAACAAACAACCTGAAATCTATTTTG
ttggtttactagcctaaattttgaggatccatctcactttaaagcttgcttgcagGAAACAGATTGGCAAAAACAACTGGCAACAAACAACCTGAAATCTATTTTGTCCAAGGAG
atctcac putative branch site (score: 39)
cttgctt putative PPT
taaattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatcttttctgggagctagtcaattggtttactagcctaaattttgaggatccatctcactttaaagcttgcttgcagGAAACAGATTGGCAAAAACAACTGGCAACAAACAACCTGAAATCTATTTTGTCCAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG