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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgtcaaactctcgatgacatcaggaaaaaaaataacgaagcaaattctgatttttgatggttttttttttctctacgtgcgatcgtgcagCGTGTTCAAGGAGTGTCCACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAT

Basic information

species Oryza sativa
transcript LOC_Os09g35760.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g35760.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G116658_T01 (Zea mays), 3'ss of exon 2
----------gtaa-gcgtcaaactctcgatgacatcaggaaaaaaaat--aacgaagcaaattctgatttttgatggttttttttttctctacgtgcgat------------------cgtgcagCGTGTTCAAGGAGTGTCCACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAT
          |    || | | |      |  | | | ||  | |  ||  |  |||| ||  |||  ||||| | |  ||||| | | |  || |   ||                  |  |||| |||||||||||||| || || || |||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| 
gtatgtcgccgcgccgcctaacatctatcacaaaacccggccagaccatgcatggaagaaatctctcttttttcacgagtttttatatatagacctataataatagttataagcatatgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaagcaaattctgatttttgatggttttttttttctctacgtgcgatcgtgcagCGTGTTCAAGGAGTGTCCACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAT
              atttttgatggttttt  TA-rich tract