1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taagactttctttagtgctctatttattattctattttgatgtcaccactccgtgcatgttaataatctgtaaactgacactagtttccttacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTCTGCGCTTTTCCTTCGTAATAACTACATCTCTGTTGGAGCCTCTGGAGC
species | Oryza sativa |
transcript | LOC_Os09g35730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTEST: gi|27578050|gb|CB000745.1|CB000745
genomic: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
EST: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTEST: gi|58598617|gb|CK009145.1|CK009145
genomic: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
EST: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTEST: gi|11442952|gb|BF430849.1|BF430849
genomic: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
EST: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTEST: gi|218497364|gb|FG953028.1|FG953028
genomic: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
EST: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTEST: gi|218485738|gb|FG958746.1|FG958746
genomic: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
EST: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTEST: gi|29659848|gb|CB656123.1|CB656123
genomic: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
EST: AGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTEST: gi|163928838|gb|EG711925.1|EG711925
genomic: AGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
EST: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
genomic: GCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCGgtaagtttct ... tacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGT
ccactccgtgcatgttaataatctgtaaactgacactagtttccttacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTCTGCGCTTTTCCTTCGTAATAACTACATCTCTGTTGGAGCCTCTGGAGC
tccttac putative branch site (score: 46)
tttccttacctact CT-rich tract
ttaataatctgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagactttctttagtgctctatttattattctattttgatgtcaccactccgtgcatgttaataatctgtaaactgacactagtttccttacctactagTTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTCTGCGCTTTTCCTTCGTAATAACTACATCTCTGTTGGAGCCTCTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - tagtgct
- - - - - - - - - - - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacac