1 5' 3' | 2 5' 3' | 3 5' 3' |
...aactaccacattaggtatttaggtggtacataaattggaacatccactgcagaatgcactggagatgcaaagaaatgtgacgaaactattcttttttcagGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGACGGAGAG
species | Oryza sativa |
transcript | LOC_Os09g33790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG GTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAAEST: gi|24468750|gb|CA305699.1|CA305699
genomic: GTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGgtgaagtctc ... cttttttcagGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAA
EST: CCAATAGAATGCTGAGCTTTTATGCACCAG GTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAAEST: gi|87018651|gb|CI254359.1|CI254359
genomic: CCAATAGAATGCTGAGCTTTTATGCACCAGgtgaagtctc ... cttttttcagGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAA
EST: GTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG GTTGGTGTGGAGAAGTTCGCAATGTTTATTTATTCTGACAATGGAACTGTAEST: gi|112785501|gb|EE590824.1|EE590824
genomic: GTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGgtgaagtctc ... cttttttcagGTTGGTGTGGAGAAGTTCGCAATG-TTATTTATTCTGACAATGGAACTGTA
EST: GTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAG GTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAA
genomic: GTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGgtgaagtctc ... cttttttcagGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAA
actgcagaatgcactggagatgcaaagaaatgtgacgaaactattcttttttcagGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGACGGAGAG
ctattcttttttc CT-rich tract
aaactattctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactaccacattaggtatttaggtggtacataaattggaacatccactgcagaatgcactggagatgcaaagaaatgtgacgaaactattcttttttcagGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGACGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- ctaccac
- - - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - - - cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgacg