1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgctgaatgttttgatttgatactaacatgcattactccactaacgaatcgagtattatcttttgggtgttattttgacctttcttgagtacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
species | Oryza sativa |
transcript | LOC_Os09g32220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAG GAAAACGGATTGCTTCATGTCCCGACAGAGGAAGCACAGAAAGCTCAGGCTEST: gi|66924228|gb|CX111076.1|CX111076
genomic: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaac ... tacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCT
EST: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAG GAAAACGGATTGCTTCATGTCCCGAAAEST: gi|58686514|gb|CK075201.1|CK075201
genomic: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaac ... tacgctgtagGAAAACGGATTGCTTCATGTCCCGAAA
EST: CATCCCGGCCAATGGC-TTCAAATCACGCAAGGTTTATTACACTAACGAG GAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTEST: gi|33682332|gb|CF310571.1|CF310571
genomic: CATCCCGGCCAA-GGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaac ... tacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCT
EST: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAG GAAAACGGATTGCTTCATGTCCCGAAEST: gi|33688252|gb|CF316491.1|CF316491
genomic: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaac ... tacgctgtagGAAAACGGATTGCTTCATGTCCCGAA
EST: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAG GAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTEST: gi|117242276|gb|CT842928.1|CT842928
genomic: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaac ... tacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCT
EST: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAG GAAAACGGATTGCTTCATGTCCCAAAAGAGGAAGCACAGAAAGCTCAGGCTEST: gi|33663183|gb|CF294150.1|CF294150
genomic: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaac ... tacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCT
EST: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAG GAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTC
genomic: ACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaac ... tacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTC
cgaatcgagtattatcttttgggtgttattttgacctttcttgagtacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
ttttgac putative branch site (score: 73)
tattatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctgaatgttttgatttgatactaacatgcattactccactaacgaatcgagtattatcttttgggtgttattttgacctttcttgagtacgctgtagGAAAACGGATTGCTTCATGTCCCGAAAGAGGAAGCACAGAAAGCTCAGGCTGCCATGTTTTCAGATCCAAACATGGCCATGGACATGATGAAGAAGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-tgctgaa
- - - - tgttttg
- - - - - - - - - tgatact
- - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttttg