1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagtaccgtaccttacacacgcgcacacctctcgccgccacgcgcacgccatggcatggcgtggcgtggcgtggcgtggcgtggcacgcgatccatttccttcgattcctgagctgaaaatcgtctcccgcttgcagGTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAG
species | Oryza sativa |
transcript | LOC_Os09g31300.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGCCACCCACCCCCGCAGCATCGCCGAGCGG GTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCEST: gi|29657039|gb|CB653314.1|CB653314
genomic: GCGCCACCCACCCCCGCAGCATCGCCGAGCGGgtcagtaccg ... ccgcttgcagGTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTC
EST: TCCGCGCCAAGCGCGGCTGCGCCACCCACCCCCGCAGCATCGCCGAGCGG GTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCEST: gi|29669315|gb|CB665590.1|CB665590
genomic: TCCGCGCCAAGCGCGGCTGCGCCACCCACCCCCGCAGCATCGCCGAGCGGgtcagtaccg ... ccgcttgcagGTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTC
EST: TCCGCGCCAAGCGCGGNTGCGCCACCCACCCCCGCAGCATCGCCGAGCGG GTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTC
genomic: TCCGCGCCAAGCGCGGCTGCGCCACCCACCCCCGCAGCATCGCCGAGCGGgtcagtaccg ... ccgcttgcagGTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTC
ggcacgcgatccatttccttcgattcctgagctgaaaatcgtctcccgcttgcagGTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAG
tctcccgctt CT-rich tract
tgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaccgtaccttacacacgcgcacacctctcgccgccacgcgcacgccatggcatggcgtggcgtggcgtggcgtggcgtggcacgcgatccatttccttcgattcctgagctgaaaatcgtctcccgcttgcagGTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
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