1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacactgttgttcttgcgtacgactaaaaatctttcatttcagaactctgttgagttctttgcttcgatgttcaaagaatgtaaatttgtgtacattgattgataaacaaagGTGATGGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCGAACGAGAGTGTTCACAGCAAAGACAAAGGCGAGGAGAGCAGCCCGGCGA
species | Oryza sativa |
transcript | LOC_Os09g29830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGCTCCTCCAAAGGTTCAGACTCCAAGAAGAGGAGAAGGCCTAACGAG GTGATGGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCGEST: gi|29646363|gb|CB651370.1|CB651370
genomic: ACTGCTCCTCCAAAGGTTCAGACTCCAAGAAGAGGAGAAGGCCTAACGAGgtaacactgt ... ataaacaaagGTGATGGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCG
EST: ACTGCTCCTCCAAAGGTTCAGACTCCAAGAAGAGGAGAAGGCCTAACGAG GTGATGGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCG
genomic: ACTGCTCCTCCAAAGGTTCAGACTCCAAGAAGAGGAGAAGGCCTAACGAGgtaacactgt ... ataaacaaagGTGATGGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCG
ctttgcttcgatgttcaaagaatgtaaatttgtgtacattgattgataaacaaagGTGATGGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCGAACGAGAGTGTTCACAGCAAAGACAAAGGCGAGGAGAGCAGCCCGGCGA
gattgat putative branch site (score: 4)
aaagaatgtaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacactgttgttcttgcgtacgactaaaaatctttcatttcagaactctgttgagttctttgcttcgatgttcaaagaatgtaaatttgtgtacattgattgataaacaaagGTGATGGGAACCGATCAAGTCCATTCTTCCAACTTGCCATCTGATTCTGCGAACGAGAGTGTTCACAGCAAAGACAAAGGCGAGGAGAGCAGCCCGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG