1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcacatatattatccatcaataattgacccacttatcttactgtgaaaacaagcttgacattttgtaatatgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAG
species | Oryza sativa |
transcript | LOC_Os09g29470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAG GTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGEST: gi|29632057|gb|CB637066.1|CB637066
genomic: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGgtcacatata ... tgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTG
EST: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAG GTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGEST: gi|29637839|gb|CB642848.1|CB642848
genomic: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGgtcacatata ... tgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTG
EST: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACACAAACGAG GTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGEST: gi|29632177|gb|CB637186.1|CB637186
genomic: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGgtcacatata ... tgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTG
EST: GAGTACTGAAACTGAAAGAAGCTGTATTGACAACCTATCACAGAAACGAG GTGAAGTTCACAGAACTAACTCTGGACACTTTCATAATGCTACAGTGTCTGEST: gi|58673945|gb|CK062631.1|CK062631
genomic: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGgtcacatata ... tgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTG
EST: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAG GTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTG
genomic: GAGTACTGAAACTGAAAGAAGCTGTATTGACAAGCTATCACAGAAACGAGgtcacatata ... tgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTG
gacccacttatcttactgtgaaaacaagcttgacattttgtaatatgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAG
attttgtaatatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcacatatattatccatcaataattgacccacttatcttactgtgaaaacaagcttgacattttgtaatatgtaatgcagGTGAAGTTCACAGAACTAACTCTGGACACTTTCAGAATGCTACAGTGTCTGGAGTGGGAACCCACTGGGTCTTATCAGATTGCTGCCAAAGAGCTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT