1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagtgccacatttgcattcgcatttgcatcaaacgaaacgcattgttcttgctctgcttgggacaattcggctctgaattctgaacatgttcctgctctgaattctgcgatgtgcgaagACACTGGCGCTTCTCGCGGAGGTGGCGGTGCTGGAAGAAGAGGTCGTCAGGCTCGAGGAGCAGGTGGTCAATTTCCGGCAAGGACTCTACCAGGAGGCCA
species | Oryza sativa |
transcript | LOC_Os09g28850.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAGGCCGCTCGGCGCTCTGCCTCGCCTGCCGCCGTATCTGCCATCTCAA AAACTGGCGCTTCTCGCGGAGGTGGCGGTGCCGGAAGAAGAGGTCGTCAGGEST: gi|117216859|gb|CT845238.1|CT845238
genomic: CGAGGCCGCTCGGCGCTCTGCCTCGCCTGCCGCCGTATCTGCCATCTCAAgtcagtgcca ... atgtgcgaagACACTGGCGCTTCTCGCGGAGGTGGCGGTGCTGGAAGAAGAGGTCGTCAGG
EST: CGAGGCCGCTCGGCGCTCTGCCTCGCCTGCCGCCGTATCTGCCATCTCAA ACACTGGCGCTTCTCGCGGAGGTGGCGGTGCTGGAAGAAGAGGTCGTCAGGEST: gi|88719831|gb|CI741766.1|CI741766
genomic: CGAGGCCGCTCGGCGCTCTGCCTCGCCTGCCGCCGTATCTGCCATCTCAAgtcagtgcca ... atgtgcgaagACACTGGCGCTTCTCGCGGAGGTGGCGGTGCTGGAAGAAGAGGTCGTCAGG
EST: CGAGGCCGCTCGGCGCTCTGCCTCGCCTGCCGCCGTATCTGCCATCTCAA ACACTGGCGCTTCTCGCGGAGGTGGNGGTGC
genomic: CGAGGCCGCTCGGCGCTCTGCCTCGCCTGCCGCCGTATCTGCCATCTCAAgtcagtgcca ... atgtgcgaagACACTGGCGCTTCTCGCGGAGGTGGCGGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgccacatttgcattcgcatttgcatcaaacgaaacgcattgttcttgctctgcttgggacaattcggctctgaattctgaacatgttcctgctctgaattctgcgatgtgcgaagACACTGGCGCTTCTCGCGGAGGTGGCGGTGCTGGAAGAAGAGGTCGTCAGGCTCGAGGAGCAGGTGGTCAATTTCCGGCAAGGACTCTACCAGGAGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG