1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgctagcaaatagcactcgtttacagaattcaaagtttggatatgctcatagcgtactcctttgagagtcctgatattttctttttcttccatcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
species | Oryza sativa |
transcript | LOC_Os09g28310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG GCAGATATCATGGAAATGCAGAAAAATGAGEST: gi|40490325|gb|BX899870.1|BX899870
genomic: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAGgtttctttct ... catcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
EST: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG GCAGATATCATGGAAATGCAGAAAAATGAGEST: gi|29661120|gb|CB657395.1|CB657395
genomic: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAGgtttctttct ... catcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
EST: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG GCAGATATCATGGAAATGCAGAAAAATGAGEST: gi|86484495|gb|CI127128.1|CI127128
genomic: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAGgtttctttct ... catcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
EST: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG GCAGATATCATGGAAATGCAGAAAAATGAGEST: gi|33799976|gb|CF325856.1|CF325856
genomic: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAGgtttctttct ... catcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
EST: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG GCAGATATCATGGAAATGCAGAAAAATGAGEST: gi|86496364|gb|CI138997.1|CI138997
genomic: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAGgtttctttct ... catcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
EST: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAG GCAGATATCATGGAAATGCAGAAAAATGAG
genomic: CTGAAGTTCAGAAACTCAAGGAGATGAACAAGGAATTGGAGAGGAAACAGgtttctttct ... catcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
ctcatagcgtactcctttgagagtcctgatattttctttttcttccatcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
tcctgat putative branch site (score: 34)
tcctgatattttcttt CT-rich tract
atattttctttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctagcaaatagcactcgtttacagaattcaaagtttggatatgctcatagcgtactcctttgagagtcctgatattttctttttcttccatcttgcagGCAGATATCATGGAAATGCAGAAAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
tgctagc
- - - - - - - - - - - - - - - - - - - - - -tgctcat