1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtactcttatccttgctagcagctctttgtcctgaagctgaaattggcttgtattttcatcagctgagaggttttctcctttttccctaccttatacagGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCG
species | Oryza sativa |
transcript | LOC_Os09g26800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTG GACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTC
genomic: GTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGgtaagttgta ... ccttatacagGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTC
tggcttgtattttcatcagctgagaggttttctcctttttccctaccttatacagGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCG
ttttctcctttttccc CT-rich tract
tattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtactcttatccttgctagcagctctttgtcctgaagctgaaattggcttgtattttcatcagctgagaggttttctcctttttccctaccttatacagGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - tccttgc
- - - - - - - - -tagcagc
- - - - - - - - - - - - - - - - ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - -gcttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagctga