1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catatttgtctgcagtgtattttggtgaaataaactttccttaaaatattcacccttataaatatctatttgctaagaagatgtaaacttttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCACCTCCTGCCTGGCTTGTTGCCCAGAATTTAGCACGAGAACTTAGCATTTT
species | Oryza sativa |
transcript | LOC_Os09g26400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAG ATACAAGATTTCTTCTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCACEST: gi|29668875|gb|CB665150.1|CB665150
genomic: TCTTGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAGgtatgtcatt ... ttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCAC
EST: TGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAG ATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCACEST: gi|29663239|gb|CB659514.1|CB659514
genomic: TGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAGgtatgtcatt ... ttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCAC
EST: TGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAG ATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCACEST: gi|218503926|gb|FG956541.1|FG956541
genomic: TGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAGgtatgtcatt ... ttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCAC
EST: TCTTGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAG ATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCAC
genomic: TCTTGATGAGAAAGAGAACGAGGAATCCATGCCAAACAACAGGGAAACAGgtatgtcatt ... ttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCAC
atattcacccttataaatatctatttgctaagaagatgtaaacttttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCACCTCCTGCCTGGCTTGTTGCCCAGAATTTAGCACGAGAACTTAGCATTTT
cttttttttcc CT-rich tract
ttataaatatctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatttgtctgcagtgtattttggtgaaataaactttccttaaaatattcacccttataaatatctatttgctaagaagatgtaaacttttttttccagATACAAGATTTCTTTTTGAAGGGCATCTTACAGTGGGACCTGAACCTCCACCTCCTGCCTGGCTTGTTGCCCAGAATTTAGCACGAGAACTTAGCATTTT
- - - tgtctgc
- - - - - - - - - - tttggtg
- - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa