Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT

Basic information

species Oryza sativa
transcript LOC_Os09g24540.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G048277_T03 (Zea mays), 3'ss of exon 2
----ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
      ||| ||   ||  | |  || | |   ||||   |  ||     |   | |||| || |||   |||   ||     | |    ||||  |||| ||| |||| ||||| || |||||||| ||||| || |||||||||||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||||| |
aatctgactaactacttcgtcgaagttttt---ctcatattttttgtgccatt-attagataccatgatgataatagatcctgactttattttttgtactacagGTAGCACAAGAGTATTCTGAATGCCCATCAGGGAAGAAAGGTGGAGATCTTGGTTGGTTCCCGCGTGGCAAGATGGCTGGTCCTTTCCAGGAGGTTGCTT

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA04G33180.2 (Glycine max), 3'ss of exon 3
ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacacta-tgtatatatccgact----gatattactattttgatactg------cagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
           |||   |        ||  || || |  ||| | | |   ||||| || |   | | | ||| | |    | ||| | ||  ||   ||||      |||||||| ||||| || || |||||||| || |||||||| |||||||| ||||||||||| || || ||||| |||||||| || |||||||||||||| |
-----------ttgaaaggataaataagaatctggttcatttgaaatcaatctagagacaaacatttttttccaatttgttgttatcaataacttttcactgacttcacagATAGCTCAAGAGTATTCAGAATGTCCTTCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCT

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA06G21080.1 (Glycine max), 3'ss of exon 3
ccacttacatgttgcttgctgtctgtaggctc-aggctgctttcataacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
      |    |   |     |||||   ||  |   |    |    ||  | ||     |     |   |   |   ||| || |    |||     ||| |||| ||||| || || ||||||||||| |||||||| |||||||| ||||||||||| || || ||||| |||||||| || |||||||| ||||| |
-ttgaaaaggataaataagaatctgttcacttgaaattaacctagagacaaaatattttgtccaattggttattatcaatagtatttcactgacttcacagGTAGCACAAGAGTATTCAGAATGTCCATCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGAAGTTGCCT

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT1G26550.1 (Arabidopsis thaliana), 3'ss of exon 3
-ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacactatgtatatatccgactgatattactattttgat--actgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
  ||  |||| ||| |  | | || ||  | | |   | |  |          ||   | | || | | |||  |     |||  | | | ||   |   ||||| ||   ||| |||||||| |||||||| || || ||||| |||||||||||||||||||| || ||||| ||||| || || || || ||||| || |
gacatctacaagtttca-gttttcggttagat-atatttcgatagatgtgtgttatgaattgtggaga-atcttaacacgatttgtgtgtggaacgatctcagATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCT

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv17s0000g06430.t01 (Vitis vinifera), 3'ss of exon 3
ccacttacatgttgcttgctgtctgtaggctcaggctgctttc-ataacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
|  | ||||| |   |  |          || |        |  | ||  | ||        |   | |     | |  | ||  |  |||  |    ||| ||||   |||||| || ||||||||||| || ||||| ||||| || ||||||||||| |||||||| || |||||||| || |||||||||||||| |
ctgcatacatctccatctcatcacactaactgaaaagaagatagaaaattctcttcttggagttcctgtgat-aattatttttcttcctttattttctcagCTAGCAGCAGAATATTCAGAATGTCCATCAGGGAAGAAGGGTGGTGACCTTGGATGGTTTCCGCGTGGCAAGATGGCTGGTCCATTTCAGGATGTTGCCT

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S217_91V6.1 (Physcomitrella patens), 3'ss of exon 3
-ccacttacatgttgctt---gctgtctgtaggctcaggctgctttcataacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
 ||| | | || ||||     ||  |   ||   |   ||  |            |     |  || |    ||  |  |  | ||  | || |  |  ||||| ||||   ||||||||| ||||||||||| || |||||||| ||||| || || ||||| || ||||| || |||||||| ||||| ||||| || || |
acca-taaaatattgccacgagcgttgcataaatttctgcatcgaatggcgttttcagtggagcatttcataatttg--tagt-ttggttttgtactcatgcagCTAGCGGCAGAATACTCAGAATGTCCATCAGGCAAGAAAGGAGGAGACCTCGGGTGGTTTCCTCGTGGCAAGATGGCTGGACCTTTCCAGGAGGTGGCCT

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ37671 (Selaginella moellendorffii), 3'ss of exon 2
ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
                 |    | ||       | |  |  ||||  | | ||      | ||   || |  || ||   | | |  ||||   || ||| | ||    || | |||||| || || |||||||||||||| || ||| | |||||||| || || || |||||||| ||||| |||||||| || || |
-----------------gtaagccgtgtttcgcgacctcgctcattcctcgctgtgacgtctg---atgtttgagtg---tcaatgctttg--cctccagGTCGCTGCCGAGTTCTCTGAGTGCCCGTCTGGAAAGAAAGGCGGGGATTTGGGATGGTTTCCTCGCGGGAAAATGGCCGGCCCCTTTCAGGAAGTCGCGT

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ15020 (Selaginella moellendorffii), 3'ss of exon 2
ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacactatg-tatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
                        ||| ||   |  |     | |  | || |   | || || | | |          | | | |  ||||   || ||| | ||    || | |||||| || || |||||||||||||| || ||| | |||||||| || || || |||||||| ||||| |||||||| || || |
------------------------gtaagccgtgtttcgcgacctcgctcattcctcgctgtgatgtctgatgtttgagtgtcaatgctttg--cctccagGTCGCTGCCGAGTTCTCTGAGTGCCCGTCTGGAAAGAAAGGCGGGGATTTGGGATGGTTTCCTCGCGGGAAAATGGCCGGCCCCTTTCAGGAAGTCGCGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88328328|gb|CI651339.1|CI651339
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88992815|gb|CI035777.1|CI035777
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|86421356|gb|CI057345.1|CI057345
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87024987|gb|CI263495.1|CI263495
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|11565000|gb|AU165636.1|AU165636
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88216000|gb|CI215849.1|CI215849
EST:     ATGTCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|86597485|gb|CI282609.1|CI282609
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88988151|gb|CI036121.1|CI036121
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88208011|gb|CI207860.1|CI207860
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87031877|gb|CI268106.1|CI268106
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87032537|gb|CI266177.1|CI266177
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|8955548|gb|BE229354.1|BE229354
EST:     GGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: GGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88957370|gb|CI095311.1|CI095311
EST:     GTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCNATCTGGAAAGAAAGGTGGAGATCTT
genomic: GTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|89162824|gb|CI099714.1|CI099714
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|86531612|gb|CI171818.1|CI171818
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88225920|gb|CI225836.1|CI225836
EST:     AT-GCTGGTTGGACAACGGGGACAAGG-CCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATTACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAA-TACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCT
EST: gi|84117082|gb|CD150849.1|CD150849
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|15858372|gb|BI811184.1|BI811184
EST:     AT-GCT-GTT-GACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88974771|gb|CI023067.1|CI023067
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87007275|gb|CI278946.1|CI278946
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88210680|gb|CI210529.1|CI210529
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|15847441|gb|BI795717.1|BI795717
EST:     AT-GCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88996285|gb|CI037576.1|CI037576
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|86511485|gb|CI154118.1|CI154118
EST:     TGGCTGGTTGGACAACGGGGACAAGGTCCCACCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: TGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88240787|gb|CI239949.1|CI239949
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88988530|gb|CI037766.1|CI037766
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|15846799|gb|BI795075.1|BI795075
EST:     AT-GCTGGTTGGAC-ACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88213693|gb|CI213542.1|CI213542
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88207346|gb|CI207195.1|CI207195
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|86529352|gb|CI169558.1|CI169558
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88214090|gb|CI213939.1|CI213939
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|117222380|gb|CT845828.1|CT845828
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87027147|gb|CI278179.1|CI278179
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88212503|gb|CI212143.1|CI212143
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|86897009|gb|CI317442.1|CI317442
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88255251|gb|CI354075.1|CI354075
EST:     AGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: AGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|86529398|gb|CI169604.1|CI169604
EST:     ACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88850335|gb|CI091828.1|CI091828
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87031863|gb|CI272564.1|CI272564
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|8857983|gb|AU095301.1|AU095301
EST:     TCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCCATCTGGAAAGAAAGGTGGAGATCT
genomic: TCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGT-CCATCTGGAAAGAAAGGTGGAGATCT
EST: gi|86602114|gb|CI260584.1|CI260584
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87019601|gb|CI282102.1|CI282102
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|87028951|gb|CI351254.1|CI351254
EST:     CAACGGGGAC-AGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: CAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|3061265|gb|C91897.1|C91897
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88428598|gb|CI553120.1|CI553120
EST:     ACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|58693353|gb|CK082040.1|CK082040
EST:     ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: ATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
EST: gi|88997769|gb|CI390331.1|CI390331
EST:     GACAACGGGGACAAGGTCCCTCCTGCCGAG-TTGCAAAG                         ATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT
genomic: GACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 107

ACTGTGCGAGAAGCAAGGGAAGATCAATGAAGCTTACAAGAAGTTGCAGGATGGCTGGTTGGACAACGGGGACAAGGTCCCTCCTGCCGAGTTTGCAAAGgtaagcggca ... gatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT
                                atattactattttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccacttacatgttgcttgctgtctgtaggctcaggctgctttcataacccactagacactatgtatatatccgactgatattactattttgatactgcagATAGCCCAAGAATACTCTGAATGTCCATCTGGAAAGAAAGGTGGAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - ttacatg
- - - - - - tgcttgc
- - - - - - - - - - - -tgtaggc
- - - - - - - - - - - - - - - - - gctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat