1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tgcttttcctgtatgattgtaaattttgatacaatcatgcctgttgtggcagctatgatgttatttgtttagctctttgacttgttattccttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCCAATCACAGATAAAGAACAAGAACATCACTGTAGATGTGAAAGCAAACT
species | Oryza sativa |
transcript | LOC_Os09g19734.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|56157245|gb|D23596.2|D23596
genomic: AGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|29634623|gb|CB639632.1|CB639632
genomic: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|33827852|gb|CF339741.1|CF339741
genomic: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|29634604|gb|CB639613.1|CB639613
genomic: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|58587649|gb|CF985957.1|CF985957
genomic: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: TTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|33802112|gb|CF326928.1|CF326928
genomic: TTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|163920092|gb|EG709862.1|EG709862
genomic: ACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGT--GATCEST: gi|33827932|gb|CF339781.1|CF339781
genomic: ACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|33794658|gb|CF323216.1|CF323216
genomic: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCEST: gi|33825589|gb|CF338605.1|CF338605
genomic: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
EST: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC GCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
genomic: ACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTCgtaagtgctc ... cttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATC
gtggcagctatgatgttatttgtttagctctttgacttgttattccttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCCAATCACAGATAAAGAACAAGAACATCACTGTAGATGTGAAAGCAAACT
ttattcctt CT-rich tract
atgttatttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttttcctgtatgattgtaaattttgatacaatcatgcctgttgtggcagctatgatgttatttgtttagctctttgacttgttattccttgatgcagGCAATCACTGCTACCAGTACAAAGAAGGCTGATCTGATTTTTGGTGAGATCCAATCACAGATAAAGAACAAGAACATCACTGTAGATGTGAAAGCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA