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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcagttttgagaattataacacatttctccatttgtagttttgtaccataaattccctctgccttttgcagctatgactattatgtgaaatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTTGTTCGATCAAGCGGTTTGAACATTAAAGAGTGCAAGCACGCAATAGCCT

Basic information

species Oryza sativa
transcript LOC_Os09g06970.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89170340|gb|CI039617.1|CI039617
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88486550|gb|CI423821.1|CI423821
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88374675|gb|CI518542.1|CI518542
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTACTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88442054|gb|CI560295.1|CI560295
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|66919436|gb|CX106284.1|CX106284
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88832250|gb|CI017484.1|CI017484
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88469598|gb|CI406869.1|CI406869
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88428061|gb|CI556955.1|CI556955
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88506303|gb|CI433809.1|CI433809
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTT-CTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCT
EST: gi|33805948|gb|CF328853.1|CF328853
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88508792|gb|CI436298.1|CI436298
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|33814200|gb|CF332979.1|CF332979
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
EST: gi|88510162|gb|CI437668.1|CI437668
EST:     TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCAT                         GTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT
genomic: TTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgca ... aatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccataaattccctctgccttttgcagctatgactattatgtgaaatattgcagGTTCTTTTGTTGTGCGCATAAAAACATGAGCTGCAGATTTTATGCCTGCTTGTTCGATCAAGCGGTTTGAACATTAAAGAGTGCAAGCACGCAATAGCCT
                                   tattatgtgaaatatt  TA-rich tract