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...taaaagtcttccgatacaaatatgcaatggtcaaagtcctgaaaataataaccaaaaaatgccagaaatgaaaatattaataattagcattgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
species | Oryza sativa |
transcript | LOC_Os09g06499.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAA GCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGAGGTTATEST: gi|29678820|gb|CB675095.1|CB675095
genomic: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAAgtacattctt ... tgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATG-GGTTAT
EST: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAA GCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTATEST: gi|117236351|gb|CT842269.1|CT842269
genomic: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAAgtacattctt ... tgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
EST: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAA GCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTATEST: gi|29614648|gb|CB619661.1|CB619661
genomic: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAAgtacattctt ... tgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
EST: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAA GCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTATEST: gi|29674506|gb|CB670781.1|CB670781
genomic: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAAgtacattctt ... tgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
EST: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAA GCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTATEST: gi|38474049|gb|CF958181.1|CF958181
genomic: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAAgtacattctt ... tgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
EST: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAA GCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
genomic: AGGCCGACCTCGCCGCTGGCATCACCGTCGGCGTCATGCTCGTGCCCCAAgtacattctt ... tgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
taataaccaaaaaatgccagaaatgaaaatattaataattagcattgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
aaatgaaaatattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagtcttccgatacaaatatgcaatggtcaaagtcctgaaaataataaccaaaaaatgccagaaatgaaaatattaataattagcattgtattgtagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG