1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacagtcatttgcatcaagcgatgaacttgttgcattttgtgcacgccattgatgtgtttactggaaatcacccataattttctacttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTAATTTTGTAGTTGGTGCCCCATCATCTGCTAGGTTACCTGAAGCGGGTA
species | Oryza sativa |
transcript | LOC_Os08g44820.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAG GTCAACAATACAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|66913463|gb|CX100311.1|CX100311
genomic: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAGgtacagtcat ... acttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CTGGTAGCAG-TCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAG GTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|58688079|gb|CK076766.1|CK076766
genomic: CTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAGgtacagtcat ... acttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAG GTCAACAATACAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|38468259|gb|CF952390.1|CF952390
genomic: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAGgtacagtcat ... acttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAG GTCAACAATACAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|86908094|gb|CI298829.1|CI298829
genomic: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAGgtacagtcat ... acttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAG GTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|29638321|gb|CB643330.1|CB643330
genomic: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAGgtacagtcat ... acttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAG GTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCT
genomic: CAGCTGGTAGCAGTTCCCATGCTTTTAGTGGGCCAGTCCTTACTCAAGAGgtacagtcat ... acttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCT
gtgcacgccattgatgtgtttactggaaatcacccataattttctacttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTAATTTTGTAGTTGGTGCCCCATCATCTGCTAGGTTACCTGAAGCGGGTA
cattgat putative branch site (score: 74)
ttttctacttttac putative PPT
ataattttctactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtcatttgcatcaagcgatgaacttgttgcattttgtgcacgccattgatgtgtttactggaaatcacccataattttctacttttacagGTCAACAATTCAACCTATACATATAGTCCAACTCAAAAGGTTTTAGAACCTAATTTTGTAGTTGGTGCCCCATCATCTGCTAGGTTACCTGAAGCGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC