1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttgttttttcatgtctcagtttatcagtttctttatccagtatatatctgcctctgtgtcgattgttctaatatgctgtcatttccttttttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACAATTCAAACAACAGCAACCATTCTGAAGACGTGGATGGAAATTCAGGGG
species | Oryza sativa |
transcript | LOC_Os08g44820.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGTGACCTCGTTCAG AACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACEST: gi|29629364|gb|CB634375.1|CB634375
genomic: TGAGTGACCTCGTTCAGgtacagtttc ... tttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGAC
EST: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAG AACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACEST: gi|58691437|gb|CK080124.1|CK080124
genomic: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAGgtacagtttc ... tttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGAC
EST: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAG AACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACEST: gi|29661739|gb|CB658014.1|CB658014
genomic: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAGgtacagtttc ... tttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGAC
EST: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAG AACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACEST: gi|29676092|gb|CB672367.1|CB672367
genomic: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAGgtacagtttc ... tttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGAC
EST: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAG AACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACEST: gi|29673244|gb|CB669519.1|CB669519
genomic: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAGgtacagtttc ... tttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGAC
EST: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAG AACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGAC
genomic: TTTCTGGTGCTATGGAGAAGGGCTATCTCCAGATGAGTGACCTCGTTCAGgtacagtttc ... tttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGAC
tatctgcctctgtgtcgattgttctaatatgctgtcatttccttttttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACAATTCAAACAACAGCAACCATTCTGAAGACGTGGATGGAAATTCAGGGG
ttctaat putative branch site (score: 2)
tgctgtcatttccttt CT-rich tract
atttcctttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttttttcatgtctcagtttatcagtttctttatccagtatatatctgcctctgtgtcgattgttctaatatgctgtcatttccttttttttttcagAACTTGGTTGATCAAAATGAGAATGGTACCATTGCCTTGCCAGTTTCTGACAATTCAAACAACAGCAACCATTCTGAAGACGTGGATGGAAATTCAGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA