Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG

Basic information

species Oryza sativa
transcript LOC_Os08g44450.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g44450.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G144387_T03 (Zea mays), 3'ss of exon 5
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG------
                              |  | | |   |   ||    | ||   ||||  | |      | | ||    |  ||  | |  |  ||||      |  || ||   ||  |  || | ||||| ||   |  | |||| |    ||||||| ||||| ||| ||||||||||||||||||| |||  ||||||||||||||    | || ||      |||||      | |    ||  ||| ||      
------------------------------gtgagtgacgct--cgccttcaccttaataaccgcttctgttgtgtttacatctaatgaacat-ttcagaatg-----tacatatgctgaaggacttggttataacatgctgtgctgtgtgctgtgcagGTGAGATGCCTCTACGTCAAGAGCACCATGGGGAAGCCATACAGGGTGTTCTAAG----TATGCTCTTTTGTGAAGTCTGCTAGGTT--CTGGCACCGAGGTTTTA

upper sequence: LOC_Os08g44450.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G181194_T02 (Zea mays), 3'ss of exon 2
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCC----ACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG
|||||| |||   ||||  | |  ||||||  |      ||||    |     |||||          |||  || || | |    ||  | |  || ||||   |||       ||   |     |  | | |  |||  || || ||  | |   |||| || || || ||||||||||||||||||||||||||| ||||| | ||||||||  || | ||        ||     | |  |   |  |||         
gtgagtgatcc--tctggtctttattgcatctatgc---cttaagaattgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc------gaaggagttggttctaacacgttgtgat-gtatgcatcttgcagGTAAGATGTCTCTACATCAAGAGCACCATGGGGAAACCATTCAGGATTTTCTAAGTCTGTTTTTTTGTGAAGTCTGCTCTTTATGATATTTGGTTTTTGA----

upper sequence: LOC_Os08g44450.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G170561_T01 (Zea mays), 3'ss of exon 6
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCC----ACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG
|||||| |||  |  ||  | |  ||||||  |      ||||    ||    |||||          |||  || || | |    ||  | |  || ||||   |||           ||  |  || | |||||  |   |  | | ||| |   |||| || ||||| |||||||||||||||||||||||||||  |||||||||||||||  |  | ||        ||     | |  |   |  |||         
gtgagtgatccat--tggtctttattgcatctatgc---cttaagaatcgttcctgtt----------gtgtttacatctaa----tgaacat-tttagaatgtaagtc---------gaaggagttggttataacacgttgtgatgtatgtgttgcagGTAAGATGCCTCTACATCAAGAGCACCATGGGGAAACCATGCAGGGTGTTCTAAGTCTGCTTTTTTGTGAAGTCTGCTCTTCATGATATTTGGTTTTTGA----

upper sequence: LOC_Os08g44450.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G862017_T01 (Zea mays), 3'ss of exon 11
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagtttta---tgtgag--aaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG
                                                               |     | |  || | |   | |||   || | |  ||| |   |||||   ||| ||   ||  |  || | |||||  |   |  | | ||  |   |||| || ||||| |||||||||||||||||||||||||||  |||||||||||||                                              
---------------------------------------------------------------atgccttaagaat-tgttcctgttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttataacacgttgtgatgtatgcgttgcagGTAAGATGCCTCTACATCAAGAGCACCATGGGGAAACCATGCAGGGTGTTCTAA----------------------------------------------

upper sequence: LOC_Os08g44450.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G369991_T01 (Zea mays), 3'ss of exon 4
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagtttta---tgtgag--aaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGT-TGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG
                              |  | | | | |   |     ||    |  |   | ||   | | |   ||    |||   || | |  ||| |   |||||   ||| ||   ||  |  || | |||||  |      | | ||  |   |||| |  ||||| |||||||||||||||||||| |||||| |||||||||||||||| || | | ||           |    | |||   | |      | 
------------------------------gtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctg----ttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttataacacgttgcgatgtatgcgttgcagGTAATATGCCTCTACATCAAGAGCACCATGGG-AAACCATTCAGGGTGTTCTAAGTCTGCTTTTTTGTGAAGTCTGCTCTTCATGATATTTGGTTTTTGAA

upper sequence: LOC_Os08g44450.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G074769_T01 (Zea mays), 3'ss of exon 4
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagtttta---tgtgag--aaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGT-TGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG
                              |  | | | | |   |     ||    |  |   | ||   | | |   ||    |||   || | |  ||| |   |||||   ||| ||   ||  |  || | |||||  |      | | ||  |   |||| || ||||| |||||||||||||||||||| ||||||  ||||||||||||||| || | | ||           |    | |||   | |      | 
------------------------------gtgagtgatcctctggtctttattgcatctatgccttaagaattgttcctg----ttgtgtttacatctaatgaacattttagaatgtaagtcgaaggagttggttataacacgttgcgatgtatgcgttgcagGTAAGATGCCTCTACATCAAGAGCACCATGGG-AAACCATGCAGGGTGTTCTAAGTCTGCTTTTTTGTGAAGTCTGCTCTTCATGATATTTGGTTTTTGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88271155|gb|CI387010.1|CI387010
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88384378|gb|CI551304.1|CI551304
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88264692|gb|CI368466.1|CI368466
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|29687405|gb|CB683680.1|CB683680
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88966602|gb|CI353153.1|CI353153
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAAATCAGGGTGTT
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAA-TCAGGGTGTT
EST: gi|33821233|gb|CF336425.1|CF336425
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|89195029|gb|CI051142.1|CI051142
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88974536|gb|CI022077.1|CI022077
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88269185|gb|CI380483.1|CI380483
EST:     AATGGGGCGGCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAT-GAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88464411|gb|CI544872.1|CI544872
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88251408|gb|CI349836.1|CI349836
EST:     AAATGAGCGTCAACTTCCTCCTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGCTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|86873715|gb|CI341148.1|CI341148
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88439395|gb|CI536367.1|CI536367
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88296837|gb|CI540189.1|CI540189
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88691700|gb|CI733778.1|CI733778
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGCAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|33690336|gb|CF318575.1|CF318575
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|86532320|gb|CI172526.1|CI172526
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|33672247|gb|CF300486.1|CF300486
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTT
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88428805|gb|CI554521.1|CI554521
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88239937|gb|CI239099.1|CI239099
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|25807648|gb|CA763609.1|CA763609
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|86507716|gb|CI150349.1|CI150349
EST:     AAATGAGCGTCAACTTCCTCGTGCCCCTTCTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|33666760|gb|CF297727.1|CF297727
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|33665358|gb|CF296325.1|CF296325
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTT
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88438231|gb|CI538590.1|CI538590
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|87024927|gb|CI261436.1|CI261436
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|86416466|gb|CI030477.1|CI030477
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88273716|gb|CI394122.1|CI394122
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88432055|gb|CI562886.1|CI562886
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|86866953|gb|CI343813.1|CI343813
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88215409|gb|CI215258.1|CI215258
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88269482|gb|CI380780.1|CI380780
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|33664248|gb|CF295215.1|CF295215
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTT
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88297766|gb|CI553395.1|CI553395
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|7332384|gb|AU085730.1|AU085730
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|33800481|gb|CF326110.1|CF326110
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|86512579|gb|CI155212.1|CI155212
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88253418|gb|CI352044.1|CI352044
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88480557|gb|CI417828.1|CI417828
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|86822948|gb|CI251956.1|CI251956
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAG
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAG
EST: gi|86835683|gb|CI348140.1|CI348140
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88298079|gb|CI558484.1|CI558484
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88217543|gb|CI217392.1|CI217392
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88460975|gb|CI553111.1|CI553111
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
EST: gi|88468547|gb|CI515029.1|CI515029
EST:     AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGCAT                         GTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC
genomic: AAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATgtgagttatc ... tgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG
                         tgataac  putative branch site (score: 2)
                                    aattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttatctgttctgagcctgtttgcatgcaattaaacttacagctcaaatctgtttaacaacatagtgaatatatatgagttttggccttgctttgaataatagttttatgtgagaaaacaactgatgataacttggaattgtttgtgtttgatagGTGAGGTGCCTTTACATCAAGAGCACCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT