1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggacccataactttcatatgtcaatgtgtacccatttctcattttgagtttgaatctggtaatgttcctgcacactgacaacagtttccttacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGTCTGTGCTGTTTTTACGTAATAACTACATCTCCGTTGGTGCCTCTGGAGC
species | Oryza sativa |
transcript | LOC_Os08g43320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTG TGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGTEST: gi|29655822|gb|CB652097.1|CB652097
genomic: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTGgtaagcttct ... tacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGT
EST: AGCAGCAATTTGGGTTTG TGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGTEST: gi|29659845|gb|CB656120.1|CB656120
genomic: AGCAGCAATTTGGGTTTGgtaagcttct ... tacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGT
EST: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTG TGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGTEST: gi|33817180|gb|CF334425.1|CF334425
genomic: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTGgtaagcttct ... tacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGT
EST: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGC-GCAATTTGGGTTTG TGCGTATTGGA-TCATCTACTTGCTATCTGGCTTTGGCEST: gi|29655821|gb|CB652096.1|CB652096
genomic: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTGgtaagcttct ... tacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGC
EST: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTG TGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGT
genomic: GCTAAGCTTGCTATTCATCGGACTCCGTCTTGAGCAGCAATTTGGGTTTGgtaagcttct ... tacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGT
gagtttgaatctggtaatgttcctgcacactgacaacagtttccttacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGTCTGTGCTGTTTTTACGTAATAACTACATCTCCGTTGGTGCCTCTGGAGC
tccttac putative branch site (score: 24)
tttccttacttact CT-rich tract
taatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacccataactttcatatgtcaatgtgtacccatttctcattttgagtttgaatctggtaatgttcctgcacactgacaacagtttccttacttactagTGCGTATTGGAATCATCTACTTGCTATCTGGCTTTGGCGGTAGCGTGCTGTCTGTGCTGTTTTTACGTAATAACTACATCTCCGTTGGTGCCTCTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - catatgt
- - - - - - - - - - - - - tgtaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca