1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ggaataagctgatcttccacttttggaatctagaaataagggtacaggtttgtatttgttctttgttaatctttatgagttctctgttcaggaacatcagCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGTTGGATTACTTTTAAATGGAATTGATCTTCCTAACTCTAGAAAG
species | Oryza sativa |
transcript | LOC_Os08g42740.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGGAACATCAGEST: gi|33793942|gb|CF322859.1|CF322859
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTAC------AA-AT--Ggtaagtttgt ... gg
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATG CAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGTEST: gi|29671896|gb|CB668171.1|CB668171
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGgtaagtttgt ... ggaacatcagCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGT
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGGAACATCAGEST: gi|29622679|gb|CB627690.1|CB627690
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTAC------AA-AT--Ggtaagtttgt ... gg
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGGAACATCAGEST: gi|58672626|gb|CK061312.1|CK061312
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTAC------AA-AT--Ggtaagtttgt ... gg
EST: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTACAAATGGAACATCAG
genomic: CTATCGATTCGAAGGGAGGAGGCGTGTGTTCTTCTTCATCACTAC------AA-AT--Ggtaagtttgt ... gg
aggtttgtatttgttctttgttaatctttatgagttctctgttcaggaacatcagCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGTTGGATTACTTTTAAATGGAATTGATCTTCCTAACTCTAGAAAG
tgttaat putative branch site (score: 3)
tttgttaatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaataagctgatcttccacttttggaatctagaaataagggtacaggtttgtatttgttctttgttaatctttatgagttctctgttcaggaacatcagCAAGTTAAGCGATGAATGGTTTGCGGATGAAGAAAAAGTTCGTGATATTGTTGGATTACTTTTAAATGGAATTGATCTTCCTAACTCTAGAAAG
- - - -gctgatc
- - - - - - - - - - - - - - - - gaaataa