Sequence
atgc intronic sequence ATGC exonic sequence...gtactcgtgatcattagcacatcggataattttttttgagcttttgtttcatcggtgtaattaagtgttaattgtccattgattgattttgcttgtgcagGACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGTTGCTTGCTCAGGCTCCAAGTTGTGCTTCATCTCCAGTTGCCGTGGTAGCTA
Basic information
species | Oryza sativa |
transcript | LOC_Os08g42420.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os08g42420.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G138425_T02 (Zea mays), 3'ss of exon 1
-------gtactcgtgatcattagcacatcggataattttttttgagcttttgtttcatcggtgtaattaagtgttaattgtccattgattgattttgcttgtgcagGACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGTTGCTTGCTCAGGCTCCAAGTTGTGCTTCATCTCCAGTTGCCGTGGTAGCTA-------------
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atgaactgaatgaagtgatgctagctcatggcaagcaatagcattaactg--agcccagctgagtggtgaagtatgtaatgcccgtcga-----tttgcttctgcagGACTCTGATG-------------GGCATGGTTCATCCTAGGTTTCTGGTTGCTTGCTCGGGGTCCAAGCTGTGCTTCATCTCCAGTTGCCGCGGTAGCAGCGCAAAGATGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88391229|gb|CI595483.1|CI595483EST: TAGGGGAGAAGCCGGGTACTCGTAGTAGGTTCTGGCGTGACGTTTTGAAG GACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGTTG
genomic: TAGGGGAGAAGCCGGGTACTCGTAGTAGGTTCTGGCGTGACGTTTTGAAGgtgagaaatc ... gcttgtgcagGACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcatcggtgtaattaagtgttaattgtccattgattgattttgcttgtgcagGACTGTGATGTGTGATCCCCACTGGCATGTTGCATCCTAGGTTCCTGGTTGCTTGCTCAGGCTCCAAGTTGTGCTTCATCTCCAGTTGCCGTGGTAGCTA
ttttgctt CT-rich tract
taattaagtgttaatt TA-rich tract