1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agatgaaaccatacatataaaagacatacattgtagcagtaatgtaaatccgagactgaacttacctgtcaatctgttattatttttttctcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAG
species | Oryza sativa |
transcript | LOC_Os08g41460.8 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29683115|gb|CB679390.1|CB679390
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29684942|gb|CB681217.1|CB681217
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29662553|gb|CB658828.1|CB658828
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29663222|gb|CB659497.1|CB659497
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTEST: gi|29615644|gb|CB620656.1|CB620656
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
EST: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGG AAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
genomic: ACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGgttggtcttt ... tcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGT
aaatccgagactgaacttacctgtcaatctgttattatttttttctcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAG
aacttac putative branch site (score: 97)
tctgttattatttttt putative PPT
tcaatctgttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgaaaccatacatataaaagacatacattgtagcagtaatgtaaatccgagactgaacttacctgtcaatctgttattatttttttctcttggccagAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG