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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccacgagaaggagggggtggaattgattgattgattgattgattgattgattgttgttggtggtggtggtctttggatccttgagaggagatgtgtgttcttgacttgatctgtgcgtttggttcatcttcggatttgggtgttgcagGTGGATTCGGGGGAAACGTTGGGCATGACGCGCATGTCCTCTACACGCTCAGCGCCGTGCAGGTCCTGTGCCTCTTTGATCGGCTTGACGCTCTCGATGT

Basic information

species Oryza sativa
transcript LOC_Os08g40140.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g40140.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G124557_T01 (Zea mays), 3'ss of exon 3
gtaccacgagaaggagggggtggaattgattgattgattgattgattgattgattgttgttggtggtggtggtctttggatccttgagaggagatg-tgtgttcttgacttgatctgtgcgtttggttcatcttcggatttgggtgttgcagGTGGATTCGGGGGAAACGTTGGGCATGACGCGCATGTCCTCTACACGCTCAGCGCCGTGCAGGTCCTGTGCCTCTTTGATCGGCTTGACGCTCTCGATGT
                      | |        |||    ||     |||      ||    |       |||  ||||||   || || |  ||  | || | |||| || |  |||| | |         || | || ||| ||  ||||||||||| || || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| || |  || || ||
----------------------gtacctcccccttgcccaatcctcagatctgcctttccctg-------ggtgattggat---tgcgaagtaataatatggtattga-ttcacatgtgtgatctccctgggtt-gtatgtggatgc-gcagGTGGATTTGGAGGGAACGTTGGGCATGACCCGCATGTCCTCTACACGCTTAGCGCCGTGCAGGTCCTCTGCCTTTTCGATCGGCTCGATGTCCTTGACGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692470|gb|CK081157.1|CK081157
EST:     AGCCGACGAGGTCATCGAGTGGATCATGTCCTGCTACCACCCGGAATCCG                         GTGGATTCGGGGGAAACGTTGGGCATGACGCGCATGTCCTCTACACGCTCA
genomic: AGCCGACGAGGTCATCGAGTGGATCATGTCCTGCTACCACCCGGAATCCGgtaccacgag ... ggtgttgcagGTGGATTCGGGGGAAACGTTGGGCATGACGCGCATGTCCTCTACACGCTCA