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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttttgtaatataattggaggctagttctagtaatcagtatcatttggcaaacccattgaatgtgtaatttcagatgcgatatgctatcatgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGA

Basic information

species Oryza sativa
transcript LOC_Os08g37480.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g37480.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G153766_T01 (Zea mays), 3'ss of exon 2
cttttgtaatataattggaggcta--gttctagt---aatcagtatcatttggcaaacccattgaatgtgtaatttcagatg---cgatatgctatcatgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGA
       |  | || |  || |||  ||   | |   ||  || ||||| |  |||  |  |||||  || |||||| |||    |  ||||   | || || || ||||||||||||| || |||||||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| || | ||| |||||||||||| |||
------aagcagaactctagactatggtgaaaatgtcaagaagaatcatgtatcaa--ctcttgaacttgaaatttctgatattcccttatgtctttattctgtttagGTACATTCAGCAGACTCTCTGTTGAAATTAGTGTCGGAACTTAAGAGGACAGCCATCTTTTCTGGGCTTGCTTCATTGAATGAGAATGTGGATAGGAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5455511|gb|AU075677.1|AU075677
EST:     TGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATG                         GTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACA
genomic: TGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATGgtacacactt ... tgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcaaacccattgaatgtgtaatttcagatgcgatatgctatcatgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGA
                                             tgcttttc  CT-rich tract
                  tgtaattt  TA-rich tract