1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttttgtaatataattggaggctagttctagtaatcagtatcatttggcaaacccattgaatgtgtaatttcagatgcgatatgctatcatgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGA
species | Oryza sativa |
transcript | LOC_Os08g37480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tggcaaacccattgaatgtgtaatttcagatgcgatatgctatcatgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGA
tgcttttc CT-rich tract
tgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgtaatataattggaggctagttctagtaatcagtatcatttggcaaacccattgaatgtgtaatttcagatgcgatatgctatcatgcttttcagGTACATTCAGCTGATTCTCTGTTGAAACTAGTGTCAGAGCTTAAGAGAACAGCTATCTTTTCTGGGCTTGCTTCTTTAACTGAAAATGTGGATAGGCGGA
cttttgt
- - - - - - - -tggaggc
- - - - - - - - - - - - - - - - - - - - tcatttg
- - - - - - - - - - - - - - - - - - - - - - - - -aaaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcta