1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aattgaccccatgcaagtattacttttgcttaattcttctggtttatatagtttgttccgcctacttgtagtgaagatactaagcatgaaataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG
species | Oryza sativa |
transcript | LOC_Os08g37320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|32948236|gb|BP184808.1|BP184808
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|163925925|gb|EG714977.1|EG714977
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|33803307|gb|CF327527.1|CF327527
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|58669670|gb|CK058356.1|CK058356
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|163926597|gb|EG713613.1|EG713613
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: ATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACCGTTGACACCGTGACTCCTCAGTACAAGCCAEST: gi|33802541|gb|CF327143.1|CF327143
genomic: ATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTA-CGTTGACACCGTGACTCCTCAGTACAAGCCA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|58603329|gb|CK013857.1|CK013857
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGEST: gi|163920020|gb|EG709826.1|EG709826
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAG
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|33683470|gb|CF311709.1|CF311709
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: CTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAEST: gi|33662295|gb|CF293262.1|CF293262
genomic: CTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAAT-CCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|163918517|gb|EG711627.1|EG711627
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: TAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|32947994|gb|BP184566.1|BP184566
genomic: TAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAEST: gi|163920610|gb|EG711789.1|EG711789
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCATEST: gi|27577854|gb|CB000549.1|CB000549
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
EST: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
genomic: AAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAAgtaagcattt ... ataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAA
atatagtttgttccgcctacttgtagtgaagatactaagcatgaaataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG
atgaaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgaccccatgcaagtattacttttgcttaattcttctggtttatatagtttgttccgcctacttgtagtgaagatactaagcatgaaataaatgcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - ccatgca
- - - - - - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - -cttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa