1 5' 3' | 2 5' 3' | 3 5' 3' |
...aacaaaaagaaaatgaagggtcttcaaaaaagaaattgaaggcgcagggaatgatggagcgatgggcctgatggtgatctttgtctctgtggtttggtagGCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGACATGGCTGGTGTGCGTGCTGGACCTCCCGGAGAAGCCCACCAAGTACGG
species | Oryza sativa |
transcript | LOC_Os08g36480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCG GCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGAEST: gi|58609420|gb|CK037453.1|CK037453
genomic: CGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCGgtgagcacgc ... ggtttggtagGCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
EST: CGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCG GCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGAEST: gi|29637325|gb|CB642334.1|CB642334
genomic: CGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCGgtgagcacgc ... ggtttggtagGCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
EST: CGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCG GCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
genomic: CGGCATCACCACGCAGCGCGGCTACACCATGAAGGGATACGCCTACTCCGgtgagcacgc ... ggtttggtagGCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGA
agggaatgatggagcgatgggcctgatggtgatctttgtctctgtggtttggtagGCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGACATGGCTGGTGTGCGTGCTGGACCTCCCGGAGAAGCCCACCAAGTACGG
gcctgat putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaaaaagaaaatgaagggtcttcaaaaaagaaattgaaggcgcagggaatgatggagcgatgggcctgatggtgatctttgtctctgtggtttggtagGCGGCGGCAAGAGGATCACGCGGGTGGAGGTGACGCTGGACGGCGGCGAGACATGGCTGGTGTGCGTGCTGGACCTCCCGGAGAAGCCCACCAAGTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC