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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctatctcatcctacgaacttcctgttaattaaaccataattttggctcaggcacctaactaaatatgtgtggtcatctcttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT

Basic information

species Oryza sativa
transcript LOC_Os08g36150.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g36150.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G021816_T01 (Zea mays), 3'ss of exon 2
gtattcta----tctcatcctacgaacttcctgttaattaaaccataattttggctcaggcacctaactaaatatgtgtggtcatctcttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT
||||  |     ||  || || |||||  |   |   || |  |      ||| |||  | || ||     || ||| || |  |    |   | ||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |  
gtatgttgatattcctatgcttcgaacaccaaatctgttgatgc------ttgtctcttgtacttac---gatctgtttgctt-ttgagtacttgcagGTATGGAAATTCAACTGTGGTAGAGAACACCGAGAGAGGCTGGAGAGAACTCATATTCCAGCGGATACGCGGAGTGTTCGGTTTTGGGATCTAAAGAATC

upper sequence: LOC_Os08g36150.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G038108_T01 (Zea mays), 3'ss of exon 2
gtattctatctcatcctacgaacttcctgttaattaaaccat-aattttggctcaggcacctaactaaatatgtgtggtcatctcttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT-
|||| | |      |  |||   |     | || ||  | ||  || ||| |||  | || ||    ||| | |  |  | |      | | ||| ||||| |||||||||||||| |||||||||||| ||||||||||||| ||||| |||||| ||||||| ||  |||||||||||||||||||||| ||| 
gtatgccaatatg-ctcacgccttaaacatcaaatatgctattgatgttgtctcttgtacttac---aatctattcg--ccttgagcaattgcagGTATGGGAATTCAACTGTGGTTGAGAACACGGAGAGAGGCTGGAGAGATCTCATATTCCAGCGGATACGTGGGATGTTTGGTTTTGGGATCTAAAG-AGTC

upper sequence: LOC_Os08g36150.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA02G28830.2 (Glycine max), 3'ss of exon 2
gtattctatctcatcctacgaacttcctgttaattaaaccataattttggctcaggcacctaactaaatatgtgtggtcatctcttgactt-------cagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT
    |   ||      ||     |||   ||   |     ||   ||| |||||  |   | ||| |  || ||||||    |  |  |||       ||||||||||||| ||||||||||||||||||| ||| | || ||| | || ||||| ||||| ||||||||    | |||||||||||| || | |     |
---gtgagtcggtgtttaatcgtttcggtttgggtttggaattggttttgctcaatcgagttactgaggatatgtggttgcttgcttgcttgcaaatgcagATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACGGACTGCGTTTGGTTTTGGAATTTGAGCTTTT

upper sequence: LOC_Os08g36150.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA09G16680.1 (Glycine max), 3'ss of exon 3
gtattctatctcatcctacgaacttcctgttaattaaaccataattttggctcaggcacctaactaaatatgtgtggtcatctcttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT
||     |     |   |  || |   | |   ||  |   |  ||||| |||    | | |  ||    | |||||| | ||    | | ||||||||||||| ||||||||||||||||||| ||| | || ||| | || ||||| ||||| ||||||||    | |||||||||||| || | |     |
gtgagtcagt--gtttaatcaattcagtttgggtttgaaatttgttttg-ctcg---atcgagttaccgttatgtggtta-cttgcaaatgcagATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGTTGGCGGGATCTCATTTTCCAAAGGATACGAACTGCGTTTGGTTTTGGAATTTGAGATTTT

upper sequence: LOC_Os08g36150.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA02G28830.1 (Glycine max), 3'ss of exon 2
gtattctatctcatcctacgaacttcctgttaattaaaccataattttggctcaggcacctaactaaatatgtgtggtcatctcttgactt-------cagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT
    |   ||      ||     |||   ||   |     ||   ||| |||||  |   | ||| |  || ||||||    |  |  |||       ||||||||||||| ||||||||||||||||||| ||| | || ||| | || ||||| ||||| ||||||||  || ||                        
---gtgagtcggtgtttaatcgtttcggtttgggtttggaattggttttgctcaatcgagttactgaggatatgtggttgcttgcttgcttgcaaatgcagATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACG--GACTGC-----------------------

upper sequence: LOC_Os08g36150.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA02G28830.3 (Glycine max), 3'ss of exon 2
gtattctatctcatcctacgaacttcctgttaattaaaccataattttggctcaggcacctaactaaatatgtgtggtcatctcttgactt-------cagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT
    |   ||      ||     |||   ||   |     ||   ||| |||||  |   | ||| |  || ||||||    |  |  |||       ||||||||||||| ||||||||||||||||||| ||| | || ||| | || ||||| ||||| ||||||||    | |||||                    
---gtgagtcggtgtttaatcgtttcggtttgggtttggaattggttttgctcaatcgagttactgaggatatgtggttgcttgcttgcttgcaaatgcagATATGGAAATGCAACTGTGGTGGAGAACACAGAGAGGGGATGGCGGGATCTCATTTTCCAAAGGATACGGACTGCGTTTG--------------------

upper sequence: LOC_Os08g36150.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv08s0007g06710.t01 (Vitis vinifera), 3'ss of exon 2
--------------gtattctatctc-atcctacgaacttcctgttaattaaacc--ataattttggctcaggcacctaactaaatatgtgtggtcatctcttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT
               |    | | |  ||  |      ||  ||||  | |  |    | ||| || ||   |   ||   |     ||  | |  || || | | | ||||||||| ||| |||| ||||| |||||||| ||  |||| ||||| || ||||| ||||| | |||| | | ||||||||||||||| || | ||    |
gttggtttctgttgatggcttgttttgattttgttctgtttttgttcctaaggctctgtgattctgactt--gtggctgtttgtgattgctttggtatttcatta-tgcagATATGGGAATGCAACAGTGGTAGAGAACACTGAAAGAGGGTGGAGGGATCTCATTTTCCACAAGATAAGAGCAGTGTTTGGTTTTGGAATATGAATTTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18385936|gb|BM419135.1|BM419135
EST:     GGAGTTACAGTCATAAGCCTC-AACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86435886|gb|CI107119.1|CI107119
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|88983071|gb|CI020635.1|CI020635
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|88201074|gb|CI201429.1|CI201429
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86542823|gb|CI183029.1|CI183029
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86600082|gb|CI258422.1|CI258422
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|58673137|gb|CK061823.1|CK061823
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|8856189|gb|AU093507.1|AU093507
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86835393|gb|CI347850.1|CI347850
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86537709|gb|CI177915.1|CI177915
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|11442599|gb|BF430502.1|BF430502
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|89178689|gb|CI391687.1|CI391687
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|89187794|gb|CI009778.1|CI009778
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86537688|gb|CI177894.1|CI177894
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|89194537|gb|CI116974.1|CI116974
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86427705|gb|CI072802.1|CI072802
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86259934|gb|CI065807.1|CI065807
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86418705|gb|CI053506.1|CI053506
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|89176401|gb|CI043422.1|CI043422
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|89167012|gb|CI104298.1|CI104298
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|86254840|gb|CI061151.1|CI061151
EST:     GGAGTTACAGTCATAAGCCTCAAACCAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|88480808|gb|CI418079.1|CI418079
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|163917772|gb|EG712122.1|EG712122
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTG
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTG
EST: gi|86523229|gb|CI163435.1|CI163435
EST:     TTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: TTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
EST: gi|2797408|gb|AA750702.1|AA750702
EST:     GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAG                         ATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT
genomic: GGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 37 (downstream exon)
Score: 12

GTTAGGTTGGTATTTGATGAGCCTGAGTCGGGAGTTACAGTCATAAGCCTCAAACAAACTGATGTGCCAGAGGAAGACAGgtattctatc ... ttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataattttggctcaggcacctaactaaatatgtgtggtcatctcttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT
                                      tcatctctt  CT-rich tract
                     taactaaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattctatctcatcctacgaacttcctgttaattaaaccataattttggctcaggcacctaactaaatatgtgtggtcatctcttgacttcagATATGGAAATTCAACTGTGGTGGAGAACACGGAGCGAGGCTGGAGAGAACTCATCTTCCAGAGGATACGCGGAGTGTTTGGTTTTGGGATCTAAAGCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT