1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caataacactttatgtgactatcttgtgatacacctgagacatgtcctactgagatgtctgcatctttgaatactcatcaagtcatttttgttcatgtagGAAAGACATGGAATCAGTGGATCTGGATGTCAACCAGTTCTTCAAGGCCATGGAATCTGTGCTAGGTCGTTCAAAAGATGAACCTGGCAATGAAGCCGGG
species | Oryza sativa |
transcript | LOC_Os08g34740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGTTCGCAAAATGTCAAGCTTTGAGGGAGCTGAAGTTCCTGCAAACAG GAAAGACATGGAATCAGTGGATCTGGATGTCAACCAGTTCTTCAAGGCCATEST: gi|218493390|gb|FG956808.1|FG956808
genomic: TTTGTTCGCAAAATGTCAAGCTTTGAGGGAGCTGAAGTTCCTGCAAACAGgttttcttct ... gttcatgtagGAAAGACATGGAATCAGTGGATCTGGATGTCAACCAGTTCTTCAAGGCCAT
EST: TTTGTTCGCAAAATGTCAAGCTTTGAGGGAGCTGAAGTTCCTGCAAACAG GAAAGACATGGAATCAGTGGATCTGGATGTCAACCAGTTCTTCAAGGCCAT
genomic: TTTGTTCGCAAAATGTCAAGCTTTGAGGGAGCTGAAGTTCCTGCAAACAGgttttcttct ... gttcatgtagGAAAGACATGGAATCAGTGGATCTGGATGTCAACCAGTTCTTCAAGGCCAT
cctactgagatgtctgcatctttgaatactcatcaagtcatttttgttcatgtagGAAAGACATGGAATCAGTGGATCTGGATGTCAACCAGTTCTTCAAGGCCATGGAATCTGTGCTAGGTCGTTCAAAAGATGAACCTGGCAATGAAGCCGGG
tttttgttc CT-rich tract
atttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caataacactttatgtgactatcttgtgatacacctgagacatgtcctactgagatgtctgcatctttgaatactcatcaagtcatttttgttcatgtagGAAAGACATGGAATCAGTGGATCTGGATGTCAACCAGTTCTTCAAGGCCATGGAATCTGTGCTAGGTCGTTCAAAAGATGAACCTGGCAATGAAGCCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-aataaca
- - - - - - - - - - - -ttgtgat
- - - - - - - - - - - - - - - -cacctga
- - - - - - - - - - - - - - - - - - - - - - -cctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgc