1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaatggtccaattctgtcctttgattaacatttaactgtcatattatgtccctatttttctagtgcagcataaatcatgtctttttgttaaaacgttttgttctaaatgtctcatgtgattgcctttataaataaccaaatatgttttttttttcaaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAG
species | Oryza sativa |
transcript | LOC_Os08g34060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAEST: gi|29622066|gb|CB627077.1|CB627077
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGA
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAEST: gi|88423380|gb|CI576505.1|CI576505
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGA
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTTAEST: gi|88412287|gb|CI573563.1|CI573563
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTTTA
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCEST: gi|88406122|gb|CI593902.1|CI593902
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATC
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAEST: gi|88410307|gb|CI575905.1|CI575905
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGA
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTEST: gi|29626394|gb|CB631405.1|CB631405
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTT
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAEST: gi|88312356|gb|CI584879.1|CI584879
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGA
EST: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGG GAACTGTATGTCTTGCGGTTTT
genomic: GTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGgtaatggtcc ... caaaacccagGAACTGTATGTCTTGCGGTTTT
tctcatgtgattgcctttataaataaccaaatatgttttttttttcaaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAG
aaataac putative branch site (score: 2)
tatgttttttttttc putative PPT
tttataaataaccaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggtccaattctgtcctttgattaacatttaactgtcatattatgtccctatttttctagtgcagcataaatcatgtctttttgttaaaacgttttgttctaaatgtctcatgtgattgcctttataaataaccaaatatgttttttttttcaaaacccagGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA