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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcatgtatcgttttcacacgaatgaattgaacttcatgcaatgaaagtttgtcaggatgtcttattattgtaccctttttgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTGAAGTTCGGTGATGCCACATATAATCTGTACAGTCACAGCTTTCTACAAC

Basic information

species Oryza sativa
transcript LOC_Os08g33850.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66923290|gb|CX110138.1|CX110138
EST:     ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAA                         GTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGGTCTCTCATACTCTG
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
EST: gi|58592981|gb|CF991289.1|CF991289
EST:     ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAG                         GTAACTTACGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
EST: gi|58691243|gb|CK079930.1|CK079930
EST:     ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAG                         GTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
EST: gi|58691215|gb|CK079902.1|CK079902
EST:     ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAG                         GTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG
genomic: ACTCACAAGATACTACGGGGATAATTGAGCTTGGTGGAGCTTCCGTTCAGgtttcatgta ... tgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcaatgaaagtttgtcaggatgtcttattattgtaccctttttgttgaatagGTAACTTTTGTTACGGACAAACCTTTGCCTCCAGAGTTCTCTCATACTCTGAAGTTCGGTGATGCCACATATAATCTGTACAGTCACAGCTTTCTACAAC
                                      ccctttttgtt  CT-rich tract
                           ttattattgta  TA-rich tract