1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttctgcataatcttgcatgtgctcttcgactgattagtcgaaactcgaaagtggacttgtatcctcatcttttgtcgcaatggtttgtgaatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTGCTGGTTTCCAG
species | Oryza sativa |
transcript | LOC_Os08g33830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTEST: gi|29673175|gb|CB669450.1|CB669450
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
EST: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATACATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTEST: gi|58609701|gb|CK037734.1|CK037734
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
EST: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTEST: gi|66921961|gb|CX108809.1|CX108809
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
EST: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTEST: gi|58688477|gb|CK077164.1|CK077164
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
EST: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTEST: gi|58685802|gb|CK074489.1|CK074489
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
EST: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTEST: gi|33808387|gb|CF330082.1|CF330082
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
EST: CTTTTGAAGGTGTCCAGCCTGATGATATTAGCATAGATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTEST: gi|58672826|gb|CK061512.1|CK061512
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
EST: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTG GTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
genomic: CTTTTGAAGGTGTCCAGCCTAATGATATTAGCATAGATGTCATTCATTTGgtaagtatgc ... aatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCT
tcgaaagtggacttgtatcctcatcttttgtcgcaatggtttgtgaatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTGCTGGTTTCCAG
aatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgcataatcttgcatgtgctcttcgactgattagtcgaaactcgaaagtggacttgtatcctcatcttttgtcgcaatggtttgtgaatgttttagGTATTTTCCGCATTTGGGTTTGTCCACAAGATAGCAACCTTTGAGAAGGCTGCTGGTTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
tttctgc
- - - - - - - tgcatgt